| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,568,657 – 21,568,747 |
| Length | 90 |
| Max. P | 0.564567 |
| Location | 21,568,657 – 21,568,747 |
|---|---|
| Length | 90 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 68.28 |
| Shannon entropy | 0.59301 |
| G+C content | 0.46166 |
| Mean single sequence MFE | -26.70 |
| Consensus MFE | -11.01 |
| Energy contribution | -11.58 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.564567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21568657 90 + 24543557 AGGCCAGGGAGCGCGGGGAGGUUCGGGAUAACCGCGGCUUCUUUGCCAAAUACGUAAG----UACAAAUACUUUG----GCCUGAAAUCCUUUAUUAC------------------ (((((((((.(.((((((((((((((.....))).))))))))))))...(((....)----))......)))))----))))...............------------------ ( -34.60, z-score = -3.23, R) >droWil1.scaffold_180727 1662859 94 - 2741493 AGGCCAGGGAACGCGGUGAAGUGCGUGAUAACCGCGGCUUCUUAGCAAAAUACGUAAG----UACAUAAUGCACAAAAAUUGUGGCAAUUUGAAUUAU------------------ (((((.(....)(((((.............))))))))))....((....(((....)----))((((((........))))))))............------------------ ( -23.42, z-score = -0.65, R) >droPer1.super_96 142891 90 - 202244 AGGCCAGAGAUCGCGGGGAAGUUCGUGAUAACCGAGGAUUCUUUGCCAAAUAUGUAAG----CUAAAACAUUGUG----AUUUGAAAAUAUCAGCCAA------------------ .(((...(((((((((.((((.((.(........).))..)))).))....((((...----.....)))).)))----))))((.....)).)))..------------------ ( -18.00, z-score = 0.10, R) >dp4.chrXR_group8 415981 90 + 9212921 AGGCCAGAGAUCGCGGAGAAGUUCGUGAUAACCGAGGAUUCUUUGCCAAAUAUGUAAG----CUAAAACAUUGUG----AUUUGAAAAUAUCAGCCAA------------------ .(((........((((((((.((((.......))))..))))))))(((((((((...----.....))))....----))))).........)))..------------------ ( -18.40, z-score = -0.57, R) >droAna3.scaffold_13337 6224321 94 - 23293914 AAGCCAGAGAACGAGGUGAAGUUCGCGAUAACCGCGGCUUCUUUGCCAAAUACGUAAG----UUCCAUGUUUCUGCAAGAUCUGCCAAUUAAAAUAAU------------------ ..((.(((((....((..(((.(((((.....)))))...)))..))....((....)----)......)))))))......................------------------ ( -21.50, z-score = -1.02, R) >droEre2.scaffold_4784 21222816 90 + 25762168 AAGCCAGAGAGCGCGGCGAGGUUCGGGAUAACCGCGGCUUUUUCGCCAAAUACGUAAG----UACAAGUAUUUUA----GGCGGCAAUUCUUUAUUCU------------------ ..(((.(((((.((.((..((((......)))))).)).)))))(((((((((.....----.....))))))..----)))))).............------------------ ( -25.60, z-score = -0.88, R) >droYak2.chr3L 5253510 90 - 24197627 AGGCCAGGGAGCGCGGUGAGGUUCGGGAUAACCGCGGCUUCUUCGCCAAAUACGUAAG----UUCAUAGAUUUUA----GACUGAAAUUCUUUGUUCU------------------ .(((.((((((((((((.............))))).))))))).))).........((----..((.(((.(((.----.....))).))).))..))------------------ ( -26.32, z-score = -0.90, R) >droSec1.super_11 1488805 90 + 2888827 AGGCCAGGGAGCGCGGAGAGGUUCGGGAUAACCGCGGCUUCUUCGCCAAAUACGUAAG----UACAAAUACUUUG----GCCUGAAACCCUUUAUUAC------------------ (((((((((.(.((((((((((((((.....))).))))))))))))...(((....)----))......)))))----))))...............------------------ ( -37.40, z-score = -4.13, R) >droSim1.chr3L_random 907242 90 + 1049610 AGGCCAGGGAGCGCGGGGAGGUUCGGGAUAACCGCGGCUUCUUCGCCAAAUACGUAAG----UACAAAUACUUUG----GCCUGAAACCCUUUAUUAC------------------ (((((((((.(.((((((((((((((.....))).))))))))))))...(((....)----))......)))))----))))...............------------------ ( -36.60, z-score = -3.43, R) >anoGam1.chr3L 20627109 116 - 41284009 AGGCCCGGGAGCGGGGCGAAACCAAAGACAACCGUAGCUUCUUUGCGAAAUAUGUAAGACUUUUGGAAGCUUUCUGCUCGUGCGAAUGUUCUGCUAAUCGACAUUCUCUAUUUUCU .(.((((....)))).)((((....(((.......((((((((((((.....))))).......)))))))....((....))(((((((.........))))))))))..)))). ( -25.11, z-score = 1.54, R) >consensus AGGCCAGGGAGCGCGGGGAAGUUCGGGAUAACCGCGGCUUCUUUGCCAAAUACGUAAG____UACAAAUAUUUUG____GUCUGAAAAUCUUUAUUAU__________________ ..((.(((((((((((...............)))).))))))).))...................................................................... (-11.01 = -11.58 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:30 2011