| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,551,122 – 21,551,177 |
| Length | 55 |
| Max. P | 0.716275 |
| Location | 21,551,122 – 21,551,177 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 64.04 |
| Shannon entropy | 0.58495 |
| G+C content | 0.34182 |
| Mean single sequence MFE | -10.15 |
| Consensus MFE | -4.26 |
| Energy contribution | -4.58 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21551122 55 - 24543557 AGUGCCCAUCUUAAGCUGAUAUGGCGAACCAAGUCGGUUUUAAAUAGAUAUACAU .(((...((((.((((((((.(((....))).)))))))).....)))).))).. ( -13.10, z-score = -2.15, R) >droSim1.chr3L 20887180 55 - 22553184 UGUACCCAUCUAAAGCUGAUAUGGCGAACCAAGUCGGUUUUAAAUAGAUAUACAU ((((...(((((((((((((.(((....))).))))))))....))))).)))). ( -14.40, z-score = -3.18, R) >droSec1.super_11 1471297 55 - 2888827 UGUACCCAUCUAAAGCUGAUAUGGCGAACCAAGUCGGUUUUAAAUAGAUAUACAU ((((...(((((((((((((.(((....))).))))))))....))))).)))). ( -14.40, z-score = -3.18, R) >dp4.chrXR_group6 10548807 50 + 13314419 --UUUUUAUUUUGUGAUAUUGUGAUCGACUAGCGGUUCUUUAAAUA-ACGAAC-- --.......(((((........(((((.....))))).........-))))).-- ( -4.43, z-score = 0.59, R) >droPer1.super_9 2578564 50 + 3637205 --UUUUUAUUUUGUGAUAUUGUGAUCGACUAGCGGUUCUUUAAAUA-ACGAAC-- --.......(((((........(((((.....))))).........-))))).-- ( -4.43, z-score = 0.59, R) >consensus _GUACCCAUCUUAAGCUGAUAUGGCGAACCAAGUCGGUUUUAAAUAGAUAUACAU ............((((((((.(((....))).))))))))............... ( -4.26 = -4.58 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:29 2011