| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,015,140 – 6,015,266 |
| Length | 126 |
| Max. P | 0.782543 |
| Location | 6,015,140 – 6,015,266 |
|---|---|
| Length | 126 |
| Sequences | 5 |
| Columns | 130 |
| Reading direction | forward |
| Mean pairwise identity | 74.92 |
| Shannon entropy | 0.44665 |
| G+C content | 0.47370 |
| Mean single sequence MFE | -38.89 |
| Consensus MFE | -19.44 |
| Energy contribution | -21.68 |
| Covariance contribution | 2.24 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.782543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6015140 126 + 23011544 -UUCUGCACUUGUGGAUACAAUUGUAUCU-CAAUCCGUGCGCUUG--UGUAUCUGCAUCGGGAACGCCAAUGGAAUCUCAGCACAUCUGCAGGGGCUAAUAACGCCUUAAUUGGCCGUUUUGGCAUUUGG -(((((((..(((((((((....))))).-...((((((((((((--(((....))).))))..)))..))))).......))))..)))))))(((((.((((((......)).)))))))))...... ( -40.20, z-score = -1.93, R) >droSim1.chr2L 5803382 126 + 22036055 -UUCUGCACUUGUAGAUACAAUUGUAUCU-CGAUCCGUGCGCCUG--UGUAUCUGCAUCGGGAACGCCAAUGGAAUCUCAGCACAUCUGCAGGGGCUAAUAACGCCUUAAUUGGCCGUUUUGGCAUUUGG -(((((((..(((((((((....))))))-.((((((((((((((--(((....))).))))..)))..)))).))).....)))..)))))))(((((.((((((......)).)))))))))...... ( -41.20, z-score = -2.05, R) >droSec1.super_5 4086090 126 + 5866729 -UUCUGCACUUGUAGAUACAAUUGUAUCU-CGAUCCGUGCGCUUG--UGUAUCUGCAUCGGGAACGCCAAUGGAAUCUCAGCAUAUCUGCAGGGGCUAAUAACGCCUUAAUUGGCCGUUUUGGCAUUUGG -(((((((..((((((((((..(((((..-......)))))....--))))))))))..((((...((...))..))))........)))))))(((((.((((((......)).)))))))))...... ( -37.00, z-score = -1.05, R) >droYak2.chr2L 9145614 126 - 22324452 -UGCUGCACUUGUAGAUACAUUUGUAUCU-CCAUCUGUAUGCAUG--UGCAUUGGCAUCGGGAACGCCAAUGGAAUCUCAGCACAUCUGCAGGGGCUAAUAACGCCUUUAUUGGCCGUUUUGGCAUUUGG -.((((((..((.((((((....))))))-.))..)))).))(((--(((((((((.........)))))).(.....).))))))...((((.(((((.((((((......)).))))))))).)))). ( -39.70, z-score = -1.22, R) >droWil1.scaffold_180708 4625200 106 - 12563649 UGCAUGCACUUGUAGAUACAAUUGUAUCUGCGACCUCUGUAAUAGCAUGCAGCAUCAACUCGCACGCCUUUCCCAUCUUAAUUGGCUUGC---GGCUUGUGGCAUUUGG--------------------- (((((((...(((((((((....)))))))))((....))....)))))))((..(((..((((.(((...............))).)))---)..)))..))......--------------------- ( -36.36, z-score = -3.07, R) >consensus _UUCUGCACUUGUAGAUACAAUUGUAUCU_CGAUCCGUGCGCUUG__UGUAUCUGCAUCGGGAACGCCAAUGGAAUCUCAGCACAUCUGCAGGGGCUAAUAACGCCUUAAUUGGCCGUUUUGGCAUUUGG ...(((((.(((.((((((....)))))).)))...((((.......(((....)))..((((...(.....)..)))).))))...)))))..(((((....(((......)))....)))))...... (-19.44 = -21.68 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:18 2011