Locus 8269

Sequence ID dm3.chr3L
Location 21,548,020 – 21,548,127
Length 107
Max. P 0.986091
window11361 window11362

overview

Window 1

Location 21,548,020 – 21,548,127
Length 107
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 97.01
Shannon entropy 0.05188
G+C content 0.43178
Mean single sequence MFE -30.64
Consensus MFE -27.34
Energy contribution -27.38
Covariance contribution 0.04
Combinations/Pair 1.03
Mean z-score -1.65
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.25
SVM RNA-class probability 0.614734
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21548020 107 + 24543557
AAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUACCAGCUUGCCUA
...........((((((((.....((((.((.(((.(((..((((((((((...(((.....))))))))))))).))).)))..)).))))...)))).))))... ( -29.00, z-score =  -1.11, R)
>droEre2.scaffold_4784 21202130 107 + 25762168
AAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGACGGUGAUGCCACCCAAGUUGCCAGUUUGCCUA
...........((((((((....(((((.((.(((.(((..((((((((((...(((.....))))))))))))).))).)))..)).)))))..)))).))))... ( -31.30, z-score =  -2.29, R)
>droYak2.chr3L 5231123 107 - 24197627
AAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGUUGCCAGUUUGCCUA
.......((((((((((((((.(((((((((.(((.(((....))).))).........))))))))).....((((....)))))))).))))))...)))).... ( -31.70, z-score =  -1.96, R)
>droSec1.super_11 1468125 107 + 2888827
AAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGAGAUUUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUGCCAGUAUGCCUA
...........((((((((...((((((((.((((......))))(((((.....)))))))))))))....((((((((....))))...))))))))).)))... ( -31.20, z-score =  -1.79, R)
>droSim1.chr3L 20884037 107 + 22553184
AAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUGCCAGUAUGCCUA
...........((((((((...(((((((((.(((.(((....))).))).........)))))))))....((((((((....))))...))))))))).)))... ( -30.00, z-score =  -1.11, R)
>consensus
AAUUUUACAAAGCAACUGGGUUUACUUGUGUUCGUGAUCUAUCGAUAGCGCAUAUUGUUACACAAGUGUUAUCGGCGGUGAUGCCACCCAAGCUGCCAGUUUGCCUA
...........((((((((.....((((.............((((((((((...(((.....))))))))))))).((((....))))))))...))))).)))... (-27.34 = -27.38 +   0.04)

alignment

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secondary structure

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dotplot

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Window 2

Location 21,548,020 – 21,548,127
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 97.01
Shannon entropy 0.05188
G+C content 0.43178
Mean single sequence MFE -31.45
Consensus MFE -30.38
Energy contribution -30.02
Covariance contribution -0.36
Combinations/Pair 1.10
Mean z-score -2.45
Structure conservation index 0.97
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.22
SVM RNA-class probability 0.986091
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21548020 107 - 24543557
UAGGCAAGCUGGUAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUU
...((((...(((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..)))))))))))))))...... ( -30.30, z-score =  -1.64, R)
>droEre2.scaffold_4784 21202130 107 - 25762168
UAGGCAAACUGGCAACUUGGGUGGCAUCACCGUCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUU
...((((...(((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..)))))))))))))))...... ( -29.60, z-score =  -2.24, R)
>droYak2.chr3L 5231123 107 + 24197627
UAGGCAAACUGGCAACUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUU
...((((...(((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..)))))))))))))))...... ( -32.30, z-score =  -2.99, R)
>droSec1.super_11 1468125 107 - 2888827
UAGGCAUACUGGCAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAAAUCUCGAACACAAGUAAACCCAGUUGCUUUGUAAAAUU
......(((.(((((((.(((((((......)))......((((((((..............((((......))))))))))))..)))))))))))..)))..... ( -32.53, z-score =  -2.86, R)
>droSim1.chr3L 20884037 107 - 22553184
UAGGCAUACUGGCAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUU
......(((.(((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..)))))))))))..)))..... ( -32.50, z-score =  -2.53, R)
>consensus
UAGGCAAACUGGCAGCUUGGGUGGCAUCACCGCCGAUAACACUUGUGUAACAAUAUGCGCUAUCGAUAGAUCACGAACACAAGUAAACCCAGUUGCUUUGUAAAAUU
...(((....(((((((.(((((((......)))......((((((((.........((..(((....)))..)).))))))))..))))))))))).)))...... (-30.38 = -30.02 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:28 2011