| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,547,568 – 21,547,678 |
| Length | 110 |
| Max. P | 0.547581 |
| Location | 21,547,568 – 21,547,678 |
|---|---|
| Length | 110 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 96.18 |
| Shannon entropy | 0.07087 |
| G+C content | 0.46242 |
| Mean single sequence MFE | -23.32 |
| Consensus MFE | -22.12 |
| Energy contribution | -21.96 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21547568 110 - 24543557 UCCCGAAUCAAAUGUACAUAAAUAUGUAUGUAUAGCCAGCGUACCGCACAUACGCACAUAUCCCUCGCGACAGAACAGAACAGAGUAGAGUGGAACGGCAGAGCCAGUGA ....(..((...((((((((......))))))))(((.(((((.......))))).....((((((...((.............)).))).)))..))).))..)..... ( -24.42, z-score = -1.22, R) >droEre2.scaffold_4784 21201677 105 - 25762168 UCCCGAAUGAAAUGUACAUAAAUAUGUAUGUAUAGCCAGCGUACCGCACAUACGCACAUAUCCCUCGCGACAGAACAGAA-----UAGAGUGGAACGGCAGAGCCAGUGA ............((((((((......))))))))(((.(((((.......))))).....((((((..............-----..))).)))..)))........... ( -22.79, z-score = -0.92, R) >droYak2.chr3L 5230672 110 + 24197627 UCCCCAAUCAAAUGUACAUAAAUAUGUAUGUAUAGCCAGCGUACCGCACAUACGCACAUAUCCCUCGCGAAAGAACAGAACAGUAUAGAGUGGAACGGCAGAGCCAGUGA .......((...((((((((......))))))))(((.(((((.......))))).....((((((.(....).((......))...))).)))..))).))........ ( -24.90, z-score = -1.92, R) >droSec1.super_11 1467673 110 - 2888827 UCCCGAAUCAAAUGUACAUAAAUAUGUAUGUAUAGUCAGCGUACCGCACAUACGCACAUAUCCCUCGCGACAGAACAGAACAGAAUAGAGUGGAACGGCAGAGCCAGUGA ....(..((...((((((((......))))))))(((.(((((.......))))).....((((((.....................))).)))..))).))..)..... ( -20.90, z-score = -0.18, R) >droSim1.chr3L 20883585 110 - 22553184 UCCCGAAUCAAAUGUACAUAAAUAUGUAUGUAUAGCCAGCGUACCGCACAUACGCACAUAUCCCUCGCGACAGAACAGAACAGAAUAGAGUGGAACGGCAGAGCCAGUGA ....(..((...((((((((......))))))))(((.(((((.......))))).....((((((.....................))).)))..))).))..)..... ( -23.60, z-score = -1.25, R) >consensus UCCCGAAUCAAAUGUACAUAAAUAUGUAUGUAUAGCCAGCGUACCGCACAUACGCACAUAUCCCUCGCGACAGAACAGAACAGAAUAGAGUGGAACGGCAGAGCCAGUGA ............((((((((......))))))))(((.(((((.......))))).....((((((.....................))).)))..)))........... (-22.12 = -21.96 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:26 2011