Locus 8266

Sequence ID dm3.chr3L
Location 21,531,096 – 21,531,187
Length 91
Max. P 0.700588
window11354 window11355

overview

Window 4

Location 21,531,096 – 21,531,187
Length 91
Sequences 7
Columns 92
Reading direction forward
Mean pairwise identity 65.20
Shannon entropy 0.70323
G+C content 0.62779
Mean single sequence MFE -33.04
Consensus MFE -11.65
Energy contribution -13.01
Covariance contribution 1.36
Combinations/Pair 1.67
Mean z-score -1.36
Structure conservation index 0.35
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.45
SVM RNA-class probability 0.700588
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21531096 91 + 24543557
GAUGGGGCUCCACCGACUGGCGGAGAUGCUG-GUGGCGGAGGCGGCGUUUCGGGAUCUGGACCUGGAAACGAAGAAAGUGCCGGAGCAGAGA
......(((((.(((((..(((....)))..-))..))).((((.((((((.((........)).)))))).......)))))))))..... ( -33.70, z-score =  -1.01, R)
>droWil1.scaffold_180727 1612065 85 - 2741493
GAUAAUUCCGGGUCAGCCAGUGCUGAUGUUGCACCACCAGCACCAAGCGCAGGGGAACGAGGC-GGCACUACAGGAAUCGCUAUUC------
....(((((.((....))(((((((.(.(((..((.((.((.......)).))))..))).))-))))))...)))))........------ ( -24.90, z-score =  -0.20, R)
>droAna3.scaffold_13337 6190567 79 - 23293914
GAGAGUUCGGGUCCGGCAUCAGGCGAGGCUG-GUGGCAGCUCUGGCCAAGGCGGAAACGUGGAGAGUGUUGGUGGAAUUG------------
...(((((.(..((((((((.(((.((((((-....)))).)).)))...(((....)))...)).))))))).))))).------------ ( -30.30, z-score =  -2.10, R)
>droEre2.scaffold_4784 21184407 91 + 25762168
GAUGGGGCUCCACCGACUGGUGGCGAUGCUG-GUGGUGGAGGCGGCGUUUCGGGAUCUGGACCUGGAAACGAAGAAAGUGCCGGAGCAGACA
.....(.(((((((.((..((......))..-))))))))).)...(((((((.(.((.....((....)).....))).)))))))..... ( -35.20, z-score =  -1.46, R)
>droYak2.chr3L 5212417 91 - 24197627
GAUGGGGCUCCACCGACUGGGGGAGAUGCUG-GUGGCGGAGGCGGCGUUUCGGGAUCUGGACCUGGAAACGAAGAAAGCGCCGGAGCAGACA
..((..(((((.(((((..(.(....).)..-))..))).((((.((((((.((........)).)))))).......)))))))))...)) ( -31.70, z-score =  -0.22, R)
>droSec1.super_11 1450896 91 + 2888827
GAUGGGGCUCCGCCGACUGGCGGAGAUGCUG-GUGGCGGAGGCGGCGUUUCGGGAUCUGGACCUGGAAACGAAGAAAGUGCAGGAGCAGAGA
.....(.(((((((.((..(((....)))..-))))))))).)..((((((.((........)).)))))).......(((....))).... ( -36.50, z-score =  -2.14, R)
>droSim1.chr3L 20864398 91 + 22553184
GAUGGGGCUCCGCCGACUGGCGGAGAUGCUG-GUGGCGGAGGCGGCGUUUCGGGAUCUGGACCUGGAAACGAAGAAAGUGCCGGAGCAGAGA
.....(.(((((((.((..(((....)))..-))))))))).)...(((((((.(.((.....((....)).....))).)))))))..... ( -39.00, z-score =  -2.39, R)
>consensus
GAUGGGGCUCCACCGACUGGCGGAGAUGCUG_GUGGCGGAGGCGGCGUUUCGGGAUCUGGACCUGGAAACGAAGAAAGUGCCGGAGCAGAGA
.......(((((((....)))))))..(((....))).........(((((((.((.......((....))......)).)))))))..... (-11.65 = -13.01 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 21,531,096 – 21,531,187
Length 91
Sequences 7
Columns 92
Reading direction reverse
Mean pairwise identity 65.20
Shannon entropy 0.70323
G+C content 0.62779
Mean single sequence MFE -25.15
Consensus MFE -7.23
Energy contribution -8.99
Covariance contribution 1.76
Combinations/Pair 1.44
Mean z-score -1.73
Structure conservation index 0.29
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.44
SVM RNA-class probability 0.697961
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21531096 91 - 24543557
UCUCUGCUCCGGCACUUUCUUCGUUUCCAGGUCCAGAUCCCGAAACGCCGCCUCCGCCAC-CAGCAUCUCCGCCAGUCGGUGGAGCCCCAUC
....((((..(((........((((((..(((....)))..))))))........)))..-.)))).(((((((....)))))))....... ( -25.79, z-score =  -1.77, R)
>droWil1.scaffold_180727 1612065 85 + 2741493
------GAAUAGCGAUUCCUGUAGUGCC-GCCUCGUUCCCCUGCGCUUGGUGCUGGUGGUGCAACAUCAGCACUGGCUGACCCGGAAUUAUC
------.......((((((.((...(((-....(((......)))...((((((((((......)))))))))))))..))..))))))... ( -29.30, z-score =  -1.37, R)
>droAna3.scaffold_13337 6190567 79 + 23293914
------------CAAUUCCACCAACACUCUCCACGUUUCCGCCUUGGCCAGAGCUGCCAC-CAGCCUCGCCUGAUGCCGGACCCGAACUCUC
------------.....................((..((((.(..(((.((.((((....-)))))).)))....).))))..))....... ( -19.40, z-score =  -2.24, R)
>droEre2.scaffold_4784 21184407 91 - 25762168
UGUCUGCUCCGGCACUUUCUUCGUUUCCAGGUCCAGAUCCCGAAACGCCGCCUCCACCAC-CAGCAUCGCCACCAGUCGGUGGAGCCCCAUC
.....((((((((........((((((..(((....)))..))))))..((.........-..))...)))(((....))))))))...... ( -23.30, z-score =  -1.01, R)
>droYak2.chr3L 5212417 91 + 24197627
UGUCUGCUCCGGCGCUUUCUUCGUUUCCAGGUCCAGAUCCCGAAACGCCGCCUCCGCCAC-CAGCAUCUCCCCCAGUCGGUGGAGCCCCAUC
.....(((((((((.......((((((..(((....)))..)))))).......))))((-(.((..........)).))))))))...... ( -25.64, z-score =  -1.43, R)
>droSec1.super_11 1450896 91 - 2888827
UCUCUGCUCCUGCACUUUCUUCGUUUCCAGGUCCAGAUCCCGAAACGCCGCCUCCGCCAC-CAGCAUCUCCGCCAGUCGGCGGAGCCCCAUC
..((((..((((.((.......))...))))..))))..............(((((((((-..((......))..)).)))))))....... ( -24.90, z-score =  -1.99, R)
>droSim1.chr3L 20864398 91 - 22553184
UCUCUGCUCCGGCACUUUCUUCGUUUCCAGGUCCAGAUCCCGAAACGCCGCCUCCGCCAC-CAGCAUCUCCGCCAGUCGGCGGAGCCCCAUC
....((((..(((........((((((..(((....)))..))))))........)))..-.)))).(((((((....)))))))....... ( -27.69, z-score =  -2.34, R)
>consensus
UCUCUGCUCCGGCACUUUCUUCGUUUCCAGGUCCAGAUCCCGAAACGCCGCCUCCGCCAC_CAGCAUCUCCGCCAGUCGGCGGAGCCCCAUC
.....................((((((..(((....)))..))))))....(((((((....................)))))))....... ( -7.23 =  -8.99 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:22 2011