Locus 8265

Sequence ID dm3.chr3L
Location 21,502,383 – 21,502,476
Length 93
Max. P 0.577976
window11353

overview

Window 3

Location 21,502,383 – 21,502,476
Length 93
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 94.19
Shannon entropy 0.09878
G+C content 0.38065
Mean single sequence MFE -17.34
Consensus MFE -15.72
Energy contribution -15.72
Covariance contribution -0.00
Combinations/Pair 1.12
Mean z-score -1.33
Structure conservation index 0.91
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.17
SVM RNA-class probability 0.577976
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21502383 93 + 24543557
UAAGGUUAUCGCAUUUCCCUUGUUAGUGUGACUUUUUGACCUAACCGAAGCAGUGAACUUUUACCCACAAGUUCGAACCAAUUGUCUCGUUAA
..(((((((((((((.........))))))).....))))))...(((..((((((((((........))))))......))))..))).... ( -19.30, z-score =  -1.72, R)
>droSim1.chr3L 20835061 93 + 22553184
UAAGGUUAUCGCAUUUCCCUUAUUAGUGUGACUUUUUGACCUAACCGAAGCAGUGAACUUCUACCCACAAGUUCGAACCAAUUGUCUCGUUAA
..(((((((((((((.........))))))).....))))))...(((..((((((((((........))))))......))))..))).... ( -19.30, z-score =  -2.04, R)
>droSec1.super_11 1422131 93 + 2888827
UAAGGUUAUCGCAUUUCCCUUAUUAGUGUGACUUUUUGACCUAACCGAAGCAGUGAACUUCUACCCACAAGUUCGAACCAAUUGUCUCGUUAA
..(((((((((((((.........))))))).....))))))...(((..((((((((((........))))))......))))..))).... ( -19.30, z-score =  -2.04, R)
>droYak2.chr3L 5169931 93 - 24197627
UAAGGUUAUCGCAUUUCCCUUAUUAGUAUGACUUUUCGACCUAACUGGAGCAGUGAACUUCUACCCACAAGUUCGAACUAAUUGUCUCAUUAA
(((((..(......)..)))))(((((..(((..(((((.((....((((.((....)).)).))....)).)))))......)))..))))) ( -15.40, z-score =  -0.53, R)
>droEre2.scaffold_4784 21155451 93 + 25762168
UAAGGUUAUCACAUUUCCCUUAUUAGUAUGACUUUUUGAACUAACUGAAGCAGUGAACUUUUACCCGCAAGUUCGAACUAAUUGUCUCAUUAA
(((((..(......)..)))))(((((..(((..((.(.....((((...))))((((((........))))))...).))..)))..))))) ( -13.40, z-score =  -0.33, R)
>consensus
UAAGGUUAUCGCAUUUCCCUUAUUAGUGUGACUUUUUGACCUAACCGAAGCAGUGAACUUCUACCCACAAGUUCGAACCAAUUGUCUCGUUAA
..(((((((((((((.........))))))).....))))))...(((..((((((((((........))))))......))))..))).... (-15.72 = -15.72 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:20 2011