| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,474,839 – 21,474,900 |
| Length | 61 |
| Max. P | 0.879183 |
| Location | 21,474,839 – 21,474,900 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 89.94 |
| Shannon entropy | 0.13549 |
| G+C content | 0.32681 |
| Mean single sequence MFE | -14.73 |
| Consensus MFE | -12.41 |
| Energy contribution | -12.30 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879183 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21474839 61 + 24543557 UUCAAUCGCAAAUGUAUGUGGAUGUACAUACAGACAUAUAUAUAUAUAUAUCUGUCCUUUU ............((((((((....))))))))((((.(((((....))))).))))..... ( -12.80, z-score = -1.71, R) >droSec1.super_11 1398183 57 + 2888827 UUCAAUCGCAAAUGUAUGUGGAUGUACAUACAGACAUAUACGAGUGUAU----GUCCUUUU ............((((((((....))))))))((((((((....)))))----)))..... ( -15.70, z-score = -2.32, R) >droSim1.chr3L 20812071 57 + 22553184 UUCAAUCGCAAAUGUAUGUGGAUGUACAUACAGACAUAUACGAGUGUAU----GUCCUUUU ............((((((((....))))))))((((((((....)))))----)))..... ( -15.70, z-score = -2.32, R) >consensus UUCAAUCGCAAAUGUAUGUGGAUGUACAUACAGACAUAUACGAGUGUAU____GUCCUUUU .......(((..((((((((..(((....)))..))))))))..))).............. (-12.41 = -12.30 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:18 2011