| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,474,594 – 21,474,684 |
| Length | 90 |
| Max. P | 0.564074 |
| Location | 21,474,594 – 21,474,684 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 92.74 |
| Shannon entropy | 0.13778 |
| G+C content | 0.34468 |
| Mean single sequence MFE | -17.47 |
| Consensus MFE | -15.63 |
| Energy contribution | -15.72 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.564074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21474594 90 - 24543557 GUUGCACUCGGUCUGUUCGUAUUUACUUUAAAUUUAUGCGAAAAUUAAAAACGUUUUUCGCAAGGAUUUCCAGUUGCCCGAAUGUUUUCA (..(((.((((.......(((...(((..(((((..((((((((..........))))))))..)))))..)))))))))).)))...). ( -18.41, z-score = -1.43, R) >droSim1.chr3L 20811826 90 - 22553184 GUUGCACUCGGUCUGUUCGUAUUUACUUUAAAUUUAUGCGAAAAUUAAAAACGUUUUUCGCAAGGAUUUCCAGUUGCCCGAAUGUUUUCA (..(((.((((.......(((...(((..(((((..((((((((..........))))))))..)))))..)))))))))).)))...). ( -18.41, z-score = -1.43, R) >droSec1.super_11 1397938 90 - 2888827 GUUGCACUCGGUCUGUUCGUAUUUACUUUAAAUUUAUGCGAAAAUUAAAAACGUUUUUCGCAAGGAUUUCCAGUUGCCCGAAUGUUUUCA (..(((.((((.......(((...(((..(((((..((((((((..........))))))))..)))))..)))))))))).)))...). ( -18.41, z-score = -1.43, R) >droYak2.chr3L_random 479557 90 - 4797643 GUUGCACUCGUUGUGUUCGUAUUUACUUUAAAUUUAUGCGAAAAUUAAAAACGUUUUUCGCAAGGAUUUCCAGUUGCCCGAAUGUUUUCA ...((((.....))))(((.....(((..(((((..((((((((..........))))))))..)))))..)))....)))......... ( -18.00, z-score = -1.36, R) >droEre2.scaffold_4784 21132640 90 - 25762168 GUUGCACUCGUUGUGUUCGUAUUUACUUUAAAUUUAUGCGAAAAUUAAAAACGUUUUUCGCAAGGAUUUCCAGUUGCCCGAAUGUUUUCA ...((((.....))))(((.....(((..(((((..((((((((..........))))))))..)))))..)))....)))......... ( -18.00, z-score = -1.36, R) >droAna3.scaffold_13337 19917886 80 - 23293914 ---------GUUGCACUUUUAUUUACUUUAAAUUUAUGCGAAAAUUAAAAACGUUUUUCGCAAGGAUUUCCAGCUG-CCGAAUGUUUUCA ---------((.((......................((((((((..........)))))))).((....)).)).)-).(((....))). ( -13.60, z-score = -0.91, R) >consensus GUUGCACUCGGUCUGUUCGUAUUUACUUUAAAUUUAUGCGAAAAUUAAAAACGUUUUUCGCAAGGAUUUCCAGUUGCCCGAAUGUUUUCA .............((((((.....(((..(((((..((((((((..........))))))))..)))))..)))....))))))...... (-15.63 = -15.72 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:17 2011