| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,461,778 – 21,461,894 |
| Length | 116 |
| Max. P | 0.500000 |
| Location | 21,461,778 – 21,461,894 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.70 |
| Shannon entropy | 0.43661 |
| G+C content | 0.34721 |
| Mean single sequence MFE | -24.21 |
| Consensus MFE | -12.36 |
| Energy contribution | -12.20 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 21461778 116 - 24543557 UAAUGGUCAGUAAUCAGUGCUGAUCGGUAUGAAUUUGGA-AUUCAAUAUUGAAUUCAAAUAUAAUGAAAUGAGAAUAAUAACAAGAAUCACUCCUGGAAAAGAGUUCUCCCCUAUAA ....((((((((.....))))))))((...((((((.((-(((((....))))))).........................((.((.....)).)).....))))))...))..... ( -21.70, z-score = -0.68, R) >droSim1.chr3L 20798345 117 - 22553184 UAAUGGUUAGCAAUCAGUGCUGAUCGGGACUAGUUUGGAUAUAUUCCACUGAAUUCAAAUAUUAUCAAAUGAAAAUAAUAACAAGAAUCACUCCUGGAAAUGAGUUCUCCCUAAUAA ....((((((((.....))))))))((((......((((.....))))..(((((((..((((.((....)).))))....((.((.....)).))....)))))))))))...... ( -26.60, z-score = -2.08, R) >droSec1.super_11 1385308 117 - 2888827 UAAUGGUCAGCAAUCAGUGCUGAUCGGGAUAAGUUUGGAUAUAUUCCACUGAAUUCAAAUAUAAUCAAAUGAAAAUAAUAACAAGAAUCACUCCUGGAAAUGUGUUCUCCCUAAUAA ....((((((((.....))))))))((((...((((((.((((((....((....)))))))).))))))..............(((.(((..........))))))))))...... ( -25.70, z-score = -1.93, R) >droYak2.chr3L 5139055 101 + 24197627 UAAUGGUCAGCGAUCAGUGCUGAUCAGGAAGAAUUUGGACAUGUUCAACUAAAGUAAAAAGUAAGCCAAUGG----------------CACUCGUGGAAAAAAGUCAUCCCUAAUAA ...(((((((((.....)))))))))(((.((.(((...((((....(((.........)))..(((...))----------------)...))))....))).)).)))....... ( -21.40, z-score = -1.13, R) >droEre2.scaffold_4784 21120129 100 - 25762168 UAAUGGUCAGCCAUCAGUGCUGAUCAGGAGGAUUUUGGAUAUAUU-AACUAAAGUCGAAAGUAAGGAAACGA----------------CACUCCCGGAAAAAAGUUCUCCCUAUUAA ...(((((((((....).))))))))((((((((((.........-........(((..(((..(....)..----------------.)))..)))...))))))))))....... ( -25.65, z-score = -1.93, R) >consensus UAAUGGUCAGCAAUCAGUGCUGAUCGGGAUGAAUUUGGAUAUAUUCAACUGAAUUCAAAUAUAAUCAAAUGA_AAUAAUAACAAGAAUCACUCCUGGAAAAGAGUUCUCCCUAAUAA ....((((((((.....))))))))(((...(((((((..........)))))))..................................((((.(....).))))....)))..... (-12.36 = -12.20 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:16 2011