| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,011,211 – 6,011,311 |
| Length | 100 |
| Max. P | 0.901479 |
| Location | 6,011,211 – 6,011,311 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 81.35 |
| Shannon entropy | 0.34932 |
| G+C content | 0.52682 |
| Mean single sequence MFE | -36.17 |
| Consensus MFE | -25.31 |
| Energy contribution | -25.62 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6011211 100 + 23011544 CACGGCAAAGGACUCG-----AGUGCGGUGCACUUUUGGGGGUUGGACAC--CGAUUUCUGUGCACCACGCUACUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAA ..((((((((((....-----((((.(((((((....((..(((((...)--))))..))))))))).))))..)))((.(((......))).)))))))))..... ( -37.70, z-score = -2.16, R) >droEre2.scaffold_4929 6101664 105 + 26641161 CACGGCAAAGGACUCGA--CGAGUGCGGUGCACUUUUGGGGGUUGGACACACCGAUUUCUGUGCACCACGCUACUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAA ..((((((((..(..((--((((((((((((((....((..(((((.....)))))..)))))))))..((......))))).))))))..)..))))))))..... ( -40.50, z-score = -2.53, R) >droYak2.chr2L 9141605 102 - 22324452 CACGGCAAAGGACUCG-----AGUGCGGUGCACUUUUGGGGGUUGGACACGCCGAUUUCUGUGCACCACGCUACUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAA ..((((((((((....-----((((.(((((((....((..(((((.....)))))..))))))))).))))..)))((.(((......))).)))))))))..... ( -39.10, z-score = -2.13, R) >droSec1.super_5 4082199 100 + 5866729 CACGGCAAAGGACUCG-----AGUGCGGUGCACUUUUGGGGGUUGGACAC--CGAUUUCUGUGCACCACGCUGCUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAA ..((((((..((((((-----((.(((((((((....((..(((((...)--))))..)))))))))..(((((.....)))))..))))))))))))))))..... ( -38.40, z-score = -1.95, R) >droSim1.chr2L 5799483 100 + 22036055 CACGGCAAAGGACUCG-----AGUGCGGUGCACUUUUGGGGGUUGGACAC--CGAUUUCUGUGCACCACGCUACUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAA ..((((((((((....-----((((.(((((((....((..(((((...)--))))..))))))))).))))..)))((.(((......))).)))))))))..... ( -37.70, z-score = -2.16, R) >droAna3.scaffold_12916 11425637 86 + 16180835 UACAACGAUGUCCUUACAUCGAGUGCGGUGUCCUUAUGGGGGUUGU------UGACUGUUAGGUA------UGCUCUACGUG--------CGGGUUUUGAGGGAAA- ..(((((((.(((..((((((....))))))......))).)))))------)).((.(((((..------(((.......)--------))...))))).))...- ( -23.60, z-score = -0.31, R) >consensus CACGGCAAAGGACUCG_____AGUGCGGUGCACUUUUGGGGGUUGGACAC__CGAUUUCUGUGCACCACGCUACUCCGCGCAGUUUGUUUUGGGUUUUGUUGGAAAA ..((((((..((((((.....(.((((((((((....((..((((.......))))..)))))))))..((......))))).)......))))))))))))..... (-25.31 = -25.62 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:17 2011