| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,446,631 – 21,446,732 |
| Length | 101 |
| Max. P | 0.974440 |
| Location | 21,446,631 – 21,446,732 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 80.06 |
| Shannon entropy | 0.35709 |
| G+C content | 0.52769 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -17.24 |
| Energy contribution | -17.16 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21446631 101 + 24543557 ------------ACCAAGACCCAAUUCCAAUUCCGAUUCCUUCGCUCAUUUUCCAAUCGAAAACCCAGCCCAAGUCGCUCCAGACUGCCGGGCGACACGA-UUGUGGACGUCAU ------------.....(((.....((((....(((.....))).........((((((........((((.((((......))))...))))....)))-))))))).))).. ( -23.90, z-score = -1.68, R) >droSim1.chr3L 20783138 101 + 22553184 ------------ACCAAGACCCAAUUCCAAUUCCGAUUCCUUCACUCAUUUUCCAAUCGAAAACCCAGCCCAAGUCGCUCCAGACUGCCGGGCGACACGA-UUGUGGACGUCAU ------------.....(((.....((((.....((.....))..........((((((........((((.((((......))))...))))....)))-))))))).))).. ( -22.80, z-score = -1.72, R) >droSec1.super_11 1370217 101 + 2888827 ------------ACCAAGACCCAAUUCCAAUUCCGAUUCCUUCACUCAUUUUCCAAUCGAAAACCCAGCCCAAGUCGCUCCAGACUGCCGGGCGACAUGA-UUGUGGACGUCAU ------------......................((((((..((.((((((((.....)))))....((((.((((......))))...))))....)))-.)).))).))).. ( -21.60, z-score = -1.19, R) >droYak2.chr3L 5123670 101 - 24197627 ------------ACCCAAUUCCAAUUCCAAUUCCGAUUCCUACACUCAUUUUCCAAUCGAAAACCCAGCCCAAGUCACUCCAGACUGCCGGGCACCACGA-CUGUGGACGUCAU ------------......................(((..(((((.((.(((((.....)))))....((((.((((......))))...)))).....))-.)))))..))).. ( -22.60, z-score = -3.18, R) >droEre2.scaffold_4784 21104339 113 + 25762168 ACCCAGUUCCAACUCCAACUCCAAUUCCGAUUCCGAUUCCUACACUCGUUUCCCAAUCGAAACCCCAGCCCAAGUCACUCCAGACUGCCGGGCACCACGA-CUGCGGACGUCAU .(((((((...................(((((..((..(........)..))..)))))........((((.((((......))))...)))).....))-))).))....... ( -23.50, z-score = -2.08, R) >droAna3.scaffold_13337 19887589 93 + 23293914 ------------------ACCACGUCCCAGACCCAGUUC---CAUUUCGAUUCGAAUCGAAAACCCAGCCCAAGUCGGACCAGACUGCCGGGCGACACUUUCUGUGGACGUCAU ------------------...((((((((((...(((((---..(((((((....))))))).....((((.((((......))))...)))))).))).)))).))))))... ( -33.20, z-score = -3.78, R) >consensus ____________ACCAAGACCCAAUUCCAAUUCCGAUUCCUUCACUCAUUUUCCAAUCGAAAACCCAGCCCAAGUCGCUCCAGACUGCCGGGCGACACGA_CUGUGGACGUCAU .........................((((....(((((................)))))........((((.((((......))))...))))...........))))...... (-17.24 = -17.16 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:12 2011