| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,441,721 – 21,441,813 |
| Length | 92 |
| Max. P | 0.825304 |
| Location | 21,441,721 – 21,441,813 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 85.99 |
| Shannon entropy | 0.28220 |
| G+C content | 0.50048 |
| Mean single sequence MFE | -26.71 |
| Consensus MFE | -15.40 |
| Energy contribution | -15.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.825304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21441721 92 + 24543557 CUUCUUAUCCACUUGUUGGC--AUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUCGAACUC--GCCCCGGGGCUCGC-CAAC------ ..............((((((--.(((((.((.......((.(((((....)))))))......))..)))))....--(((....)))..))-))))------ ( -29.92, z-score = -3.56, R) >droEre2.scaffold_4784 21099147 92 + 25762168 CUUCUUAUCCACUUGUUGGC--AUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUCGAACUC--GCCCCGGGGCUCGC-CAAC------ ..............((((((--.(((((.((.......((.(((((....)))))))......))..)))))....--(((....)))..))-))))------ ( -29.92, z-score = -3.56, R) >droYak2.chr3L 5118481 92 - 24197627 CUUCUUAUCCACUUGUUGGC--AUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUCGAUCUC--GCCCCGGGGCUCGC-CAAC------ ..............((((((--((((((.((.......((.(((((....)))))))......))..))))))...--(((....)))..))-))))------ ( -30.32, z-score = -3.79, R) >droSec1.super_11 1365300 92 + 2888827 CUUCUUAUCCACUUGUUGGC--AUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUCGAACUC--GCCCCGGGGCUCGCCAAG------- ...............(((((--.(((((.((.......((.(((((....)))))))......))..)))))....--(((....)))..))))).------- ( -28.22, z-score = -2.84, R) >droSim1.chr3L 20778223 92 + 22553184 CUUCUUAUCCACUUGUUGGC--AUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUCGAACUC--GCCCCGGGGCUCGC-CAAC------ ..............((((((--.(((((.((.......((.(((((....)))))))......))..)))))....--(((....)))..))-))))------ ( -29.92, z-score = -3.56, R) >dp4.chrXR_group5 14906 102 - 740492 CUUCUUAUCCACUUGUUGGCUUAUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUCUAACUCUUGCCUUUGGGCUUGCGCUGCCCAAC- ........(((((((.........))))))).......((.(((((....))))))).........................((((((.......)))))).- ( -24.70, z-score = -1.69, R) >droPer1.super_67 4383 102 + 321716 CUUCUUAUCCACUUGUUGGCUUAUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUCUAACUCUUGCCUUUGGGCUUGCGCUGCCCAAC- ........(((((((.........))))))).......((.(((((....))))))).........................((((((.......)))))).- ( -24.70, z-score = -1.69, R) >droAna3.scaffold_13337 19881967 92 + 23293914 CUUCUUAUCCACUUGUUGGC--AUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUCUAACUC---GCUCCGGGCCUGUCCAAC------ ........(((((((.....--..))))))).......((.(((((....)))))))...................---.....(((....)))...------ ( -18.60, z-score = -0.80, R) >droVir3.scaffold_13049 17846148 89 - 25233164 CUUCUUAUCCACUUGUUGGC--AUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUCUAUCGC-----CCUGGGGCAGCCAAA------- ...............(((((--...(((.((.......((.(((((....)))))))......))..)))....((-----(....))).))))).------- ( -24.72, z-score = -1.99, R) >droMoj3.scaffold_6680 19122453 89 - 24764193 CUUCUUAUCCACUUGUUGGC--AUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUCUAUCGC-----CCUGGGGCAGCCAAA------- ...............(((((--...(((.((.......((.(((((....)))))))......))..)))....((-----(....))).))))).------- ( -24.72, z-score = -1.99, R) >droGri2.scaffold_15110 5491932 100 + 24565398 CUUCUUAUCCACUUGUUGGC--AUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUUC-UCUAUCGCCCUGGAAGGGGCCCAGAGCCAAC ..............((((((--.(((((.((.......((.(((((....)))))))......)).....)-))....(((((....)))))...)))))))) ( -28.12, z-score = -1.34, R) >consensus CUUCUUAUCCACUUGUUGGC__AUCGAGUGGUUUUCUCGCAUGCAUUUAAGUGCAGCUCAUUUCCUUCUCGAACUC__GCCCCGGGGCUCGCCCAAC______ ........(((((((.........))))))).......((.(((((....))))))).............................................. (-15.40 = -15.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:11 2011