| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,429,684 – 21,429,789 |
| Length | 105 |
| Max. P | 0.573183 |
| Location | 21,429,684 – 21,429,789 |
|---|---|
| Length | 105 |
| Sequences | 13 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 65.54 |
| Shannon entropy | 0.75049 |
| G+C content | 0.58022 |
| Mean single sequence MFE | -38.70 |
| Consensus MFE | -8.22 |
| Energy contribution | -8.16 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.21 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573183 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21429684 105 + 24543557 --UCACCAUCGAAUGGUGG---CACAGCCACGACGUCAGCGACGGCGGAAACGCAACGCGAGGGAUGAGUCGAUGAGCUGCUCCUCGAGUACAUGCUCAAGGAGGAGAAU------ --....((((((...((((---(...)))))..((((.(((...(((....)))..)))....))))..))))))..((.(((((.((((....)))).))))).))...------ ( -45.70, z-score = -4.02, R) >droSim1.chr3L 20766652 105 + 22553184 --UCACCAUCGAAUGGUGG---CACAGCCACGACGUCAGCGGCGGCGGAAACGCAACGCGAGGGAUGAGUCGAUGAGCUGCUCCUCGAGUACAUGCUCAAGGAGGAGAAU------ --....((((((...((((---(...)))))..((((.(((...(((....)))..)))....))))..))))))..((.(((((.((((....)))).))))).))...------ ( -46.80, z-score = -3.98, R) >droSec1.super_11 1353782 105 + 2888827 --UCACCAUCGAAUGGUGG---CACAACCACGACGUCAGCGGCGGCGGAAACGCAACGCGAGGGAUGAGUCGAUGAGCUGCUCCUCGAGUACAUGCUCAAGGAGGAGAAU------ --....((((((...((((---.....))))..((((.(((...(((....)))..)))....))))..))))))..((.(((((.((((....)))).))))).))...------ ( -44.60, z-score = -3.69, R) >droYak2.chr3L 5106161 105 - 24197627 --UCACCAUCGAAUGGUGG---UACAGCCACUACGUCAGCGGCGGCGGAAACGCAACGCGAGGGAUGAGUCGAUGAGCUGCUCCUCGAGUAUAUGCUCAAGGAGGAGAAU------ --....((((((.((((((---.....))))))((((.(((...(((....)))..)))....))))..))))))..((.(((((.((((....)))).))))).))...------ ( -47.40, z-score = -4.54, R) >droEre2.scaffold_4784 21087540 105 + 25762168 --UCACCAUCGAAUGGUGG---CACAGCCACAACGUCAGCGGCGGCGGAAACGCAACGCGAGGGAUGAGUCGAUGAGCUGCUCCUCGAGUACAUGCUCAAGGAGGAGAAU------ --....((((((...((((---(...)))))..((((.(((...(((....)))..)))....))))..))))))..((.(((((.((((....)))).))))).))...------ ( -46.80, z-score = -4.31, R) >droAna3.scaffold_13337 10247616 90 + 23293914 --UCGCCAUCGAAUGGUGC---------------------GACAGGCACAACGCAGCGCGAGGGAUGAGUCGAUGAGCUGCUCCUCGAA---AUGCUCAAGGAGGAGAUCCUUGAU --..((..((((...((((---------------------.....))))...(((((.(((........)))....)))))...)))).---..))(((((((.....))))))). ( -30.00, z-score = -0.40, R) >dp4.chrXR_group6 12775689 107 + 13314419 --UCACCAUCGAAUGGUGUGACCACAGUGCCGACGUCUGCGGCGUCGGCAACGCAGCGCGAGGGAUGAGCUGAUCAGCUGCUCCUCGAGUACAUGUUCAAGGCGGAGGA------- --.((((((...))))))...((....(((((((((.....))))))))).(((.((.(((((..(.((((....)))))..))))).)).(........))))..)).------- ( -41.80, z-score = -0.49, R) >droPer1.super_33 799735 107 + 967471 --UCACCAUCGAAUGGUGUGACCACAGUGCCGACGUCUGCGGCGUCGGCAACGCAGCGCGAGGGAUGAGCUGAUCAGCUGCUCCUCGAGUACAUGUUCAAGGCGGAGGA------- --.((((((...))))))...((....(((((((((.....))))))))).(((.((.(((((..(.((((....)))))..))))).)).(........))))..)).------- ( -41.80, z-score = -0.49, R) >droWil1.scaffold_180955 408991 105 + 2875958 --UCACCAACGAAUGGUGU------GGCAGCUGGUGGAGUGACAACACCCACAUCACGCGAAGGAUGAGUCGAUGAGCUGCUCCUUAAGUAUAUGCUGAAAGCGGAGGAGGAG--- --.(((((.....))))).------.((((((.((((.(((....)))))))(((((.(....)....)).))).))))))(((((.......(((.....)))...))))).--- ( -32.60, z-score = -1.08, R) >droVir3.scaffold_13049 9618219 93 + 25233164 --UCGCCAACGAAUGGCAU--------UGCCGGCU----CCACAGCUGCCGCACAACGCGAUGGAUGAGUCGAUAAGCCACUCCGCGAGCCCAGACUUAAGGAGACC--------- --(((....))).((((.(--------((.(((((----(.....((..(((.....)))..))..)))))).)))))))((((..(((......)))..))))...--------- ( -28.10, z-score = -1.01, R) >droMoj3.scaffold_6680 13617528 93 - 24764193 --UCGCCAACAAAUGGCAU--------UGUCAAUG----UGGCAGCGGCUGCCCAACGUGACGGAUGAGUCGAUAGGCUGCUCCUCGAGCCAAUGCUCAAGGAGCUC--------- --..((((.....)))).(--------(((((.((----.(((((...)))))))...))))))...((((....))))((((((.((((....)))).))))))..--------- ( -38.30, z-score = -2.61, R) >droGri2.scaffold_15110 17392951 93 + 24565398 --UCGCCAACGAAUGUCAU--------CAGCGGCU----CAGUGACGGGCGGUCAACGCGAUGGAUGAGUCGAUAGGCUGCUCCUCGAGCUAAUGCUCAAGAAGAAU--------- --..(((...((......)--------)..(((((----((....((.(((.....)))..))..)))))))...)))..((.((.((((....)))).)).))...--------- ( -27.60, z-score = 0.35, R) >anoGam1.chr2L 14934832 98 - 48795086 UCAAGCCAGCCGAUGGUGAU-CGAGUGCACGUAGCCGGGCGUUAUACGCCACGCAGCCGGACCGUAGCAGCAGC-AGCUGCUCCGUUCAUGAGUGAGUGA---------------- ....((((.....))))..(-((....(((((.((..((((.....))))..)).)).((((.(.((((((...-.))))))).))))....)))..)))---------------- ( -31.60, z-score = 0.73, R) >consensus __UCACCAUCGAAUGGUGU___CACAGCCACGACGUCAGCGGCGGCGGCAACGCAACGCGAGGGAUGAGUCGAUGAGCUGCUCCUCGAGUACAUGCUCAAGGAGGAGAA_______ ....((((.....))))............................................((((..(((......)))..)))).((((....)))).................. ( -8.22 = -8.16 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:10 2011