| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,406,597 – 21,406,663 |
| Length | 66 |
| Max. P | 0.848232 |
| Location | 21,406,597 – 21,406,663 |
|---|---|
| Length | 66 |
| Sequences | 4 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 93.94 |
| Shannon entropy | 0.09834 |
| G+C content | 0.51515 |
| Mean single sequence MFE | -21.25 |
| Consensus MFE | -18.30 |
| Energy contribution | -19.30 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848232 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21406597 66 + 24543557 AAACCAAGUUGGAACCAAAACCAAGACCAGCACUAGGACCUAGGUCCUGCUGGAAUUUCGGCCAGC ...((...((((........))))..((((((...((((....))))))))))......))..... ( -20.00, z-score = -1.79, R) >droSim1.chr3L 20741269 66 + 22553184 AAACCAAGUUGGAACCAAAACCAAGACCAGCACUAGGACCUAGGUCCUGCUGGAAUUUUGGCCAGC .......(((((..((((((......((((((...((((....))))))))))..))))))))))) ( -23.50, z-score = -2.88, R) >droSec1.super_11 1330472 66 + 2888827 AAACCAAGUUGGAACCAAAACCAAGACCAGCACUAGGACCUAGGUCCUGCUGGAAUUUUGGCCAGC .......(((((..((((((......((((((...((((....))))))))))..))))))))))) ( -23.50, z-score = -2.88, R) >droYak2.chr3L 5085527 66 - 24197627 AAACCAAGUUUGCACCCAAUCCAAGAGCCGCACCAGGACCUAGGUCCUGCUGGAAUUUUGGCCAGC ....................((((((..(.((.((((((....)))))).)))..))))))..... ( -18.00, z-score = -0.70, R) >consensus AAACCAAGUUGGAACCAAAACCAAGACCAGCACUAGGACCUAGGUCCUGCUGGAAUUUUGGCCAGC .......(((((........((((((((((((...((((....))))))))))..))))))))))) (-18.30 = -19.30 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:09 2011