| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,404,258 – 21,404,365 |
| Length | 107 |
| Max. P | 0.779868 |
| Location | 21,404,258 – 21,404,365 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 79.76 |
| Shannon entropy | 0.34388 |
| G+C content | 0.46173 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -14.64 |
| Energy contribution | -15.24 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.779868 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21404258 107 - 24543557 CCAUUUGCCCCACUAUGUGCU--AUAUGCCGAGCUACCCCCACUAUUCUAUCCAUCCCUUUGAUCAGGCAGUUCUUUCAUAAUUUCAGCAACUGCAUUCUGGGGCUUUG ......((((((..(((((((--.((((..(((((.((............................)).)))))...)))).....)))....))))..)))))).... ( -22.09, z-score = -0.99, R) >droEre2.scaffold_4784 21061842 99 - 25762168 CCAUUUGCCCC-CUAUAUGUUGUGCCACCCCGACUA---------UUCUACCCUUCCCUUUGAUCUGGCAGUUCUUUCAUAAUUCGAGCAACUGCAUUGGAGGGCUUUG ......(((((-(...((((.((((((...(((...---------..............)))...)))).((((...........)))).)).)))).)).)))).... ( -20.53, z-score = -0.97, R) >droYak2.chr3L 5083159 97 + 24197627 CCAUUUG-CCC-CUAUAUGUUGUGCUACUCCAACUA---------UUCUACCCUUCCCUUUGAUCUCGCAGUUCUUUCAUAAUUUGAGCAACUGCAUUCG-GGGCUUUG ......(-(((-(.....((((........))))..---------......................((((((..((((.....)))).))))))....)-)))).... ( -22.80, z-score = -3.72, R) >droSec1.super_11 1328140 94 - 2888827 CCAUUUGCCCCACUAUGUGCUAUAUAUGU---GCUA------------UACCCAUCCCUUUGAUCUGGCAGAUCUUUCAUAAUUUGAGCAACUGCAUUCUGGGGCUUUG ......((((((....((((........(---(((.------------.............((((.....))))............))))...))))..)))))).... ( -21.97, z-score = -1.11, R) >droSim1.chr3L 20738894 109 - 22553184 CCAUUUGCCCCACUAUGUGCUAUAUAUGCCGAGCUACCCUCACUCUUCCACCCAUCCCUUUGAUCUGGCAGUUCUUUCAUAAUUUGAGCAACUGCAUUCUGGGGCUUUG ......((((((..((((........(((((((.....)))...........((......))....))))((((...........))))....))))..)))))).... ( -26.60, z-score = -2.43, R) >consensus CCAUUUGCCCCACUAUGUGCUAUAUAUGCCCAGCUA_________UUCUACCCAUCCCUUUGAUCUGGCAGUUCUUUCAUAAUUUGAGCAACUGCAUUCUGGGGCUUUG ......(((((.......(((..........))).................................(((((((((.........))).)))))).....))))).... (-14.64 = -15.24 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:08 2011