| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,398,644 – 21,398,750 |
| Length | 106 |
| Max. P | 0.724590 |
| Location | 21,398,644 – 21,398,750 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.02 |
| Shannon entropy | 0.51490 |
| G+C content | 0.54991 |
| Mean single sequence MFE | -37.63 |
| Consensus MFE | -21.64 |
| Energy contribution | -21.23 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724590 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21398644 106 + 24543557 ------------CUGCAGGGCUCCUCCAUUUCCACGUCUUCCUCUUCGAAAUUUCCUGAGGAUGGGCGUGAACUGUGCAACUUGGGCUUCUCCAAGUAACGGCAGUCGAGGGCUGUCG-- ------------.(((((((....))).....((((((((((((...((....))..))))).))))))).....))))(((((((....)))))))..(((((((.....)))))))-- ( -38.80, z-score = -1.94, R) >droSim1.chr3L 20733510 106 + 22553184 ------------CUGCAGCGCUCCUCCAUUUCCACGUCUUCGUCUUCGAAAUUUCCAGGGGAUGGGCGUGAACUGUGUAACUUGGGUUUCUCCAAGAAACGGCAGUCGAGGGCUGUCG-- ------------..(((((.(((.........((((((..(((((((..........))))))))))))).(((((((..((((((....))))))..)).))))).))).)))))..-- ( -38.00, z-score = -1.90, R) >droSec1.super_11 1322647 106 + 2888827 ------------CUGCAGCGCUCCUCCAUUUCCACGUCUUCGUCUUCGAAAUUUCCAGAGGAUGGUAGUGAACUGUGUAACUUGGGUUUCUCCAAGAAACGGCAGUCGAGGGCUGUCG-- ------------..(((((.(((.........(((....((((((((..........))))))))..))).(((((((..((((((....))))))..)).))))).))).)))))..-- ( -35.00, z-score = -1.74, R) >droYak2.chr3L 5077651 118 - 24197627 GCACCCUCAUUGCUGGAGGGUUCCUCCAUUUCCACGUCUUCGCCUUCGUGAUUUUCAGAGGAUGGGCGUGAAAUACGCAACUUUGGCUCCUCCAAGAAGCGGCAGUCGAGUGCUGUCG-- ((((..(((((((.(((((...)))))(((((.((((((...((((..((.....))))))..))))))))))).(((..(((.((.....)))))..)))))))).)))))).....-- ( -38.80, z-score = -0.82, R) >droEre2.scaffold_4784 21056167 118 + 25762168 AGACCCUCAUUGCUUCAGGAUUCCUCCAUUUCCUCGCCGUCUCCUUCGCGAUUUUCAGAGGAUGUGCGUGAACCACGCAGCUUGGGCUCUUCCAAGAAGCGGCAGUUGAGGGCUGUCG-- ((.((((((((((....((.(((..((((.(((((...(((........))).....))))).))).).))))).(((..((((((....))))))..))))))).))))))))....-- ( -41.00, z-score = -1.18, R) >droAna3.scaffold_13337 10215530 120 + 23293914 AGCUCCACGUUUUUGAGAGGCUGCAGCAUCUCCACGUCCUCCCCGAAGCCCCAGUCGUUCGAUUCGCGUGAACUCUUCAACUUUGGCUCCAUCAGGAAGGGACAGUUGAGGGCUGUCGUG ..(((((......)).)))((.(((((.((((.(((((((..((((((....((..(((((.......))))).))....)))))).(((....))).))))).)).))))))))).)). ( -34.20, z-score = 0.89, R) >consensus ____________CUGCAGGGCUCCUCCAUUUCCACGUCUUCGCCUUCGAAAUUUCCAGAGGAUGGGCGUGAACUGUGCAACUUGGGCUCCUCCAAGAAACGGCAGUCGAGGGCUGUCG__ ................................(((((((....((((..........))))..)))))))......((..(((((......)))))..))((((((.....))))))... (-21.64 = -21.23 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:07 2011