| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,393,877 – 21,393,981 |
| Length | 104 |
| Max. P | 0.913858 |
| Location | 21,393,877 – 21,393,981 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 60.91 |
| Shannon entropy | 0.70004 |
| G+C content | 0.43330 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -10.04 |
| Energy contribution | -10.80 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21393877 104 + 24543557 AUAAUUUCAAACAUCGCCUCUGAUUACUGCUCCUACUACUUACCGCU-AUAAAUCUUCUGAAGUAAUUCGUGGCUUGGGCAGGCUGUCUUUCUGCUCCUGACACA ......(((......(((.(.(((((((((..............)).-.....((....))))))))).).)))..(((((((.......))))))).))).... ( -19.04, z-score = -0.88, R) >droAna3.scaffold_13337 10210926 94 + 23293914 ---------AUAAUUUUUUCAAGUGCUUGCCUUCAAGGCCUAUAGUUUAUA-AUAUUUUGCCAUGAUUUGUGGCAGGUCUUGGC-ACUUCCCGCUUCCACAGACA ---------...........((((((.......(((((((((((.......-.)))...(((((.....)))))))))))))))-))))................ ( -21.11, z-score = -0.88, R) >droEre2.scaffold_4784 21051478 79 + 25762168 --------------------------CUAUUUUCAAACUUCGCCUCUGACACAUUUUUUGAAAUAAUCUGCGGCUGGCGCAGGCUGCUUUUCUGCUCCUGACACA --------------------------..............((((.(((.((.(((.........))).)))))..))))((((..((......)).))))..... ( -15.30, z-score = -0.77, R) >droSec1.super_11 1317832 104 + 2888827 AUAAUUUCAAACAUCGCCUCUGAUACCUGCUCCUACUACUUACCGCC-AUAAAUCUUUUGAAGUAAUUUGUGGAAGGGGCAGGCUGUCUUUCUGCUCCUGACACA ...............((....(((((((((((((.((((((((...(-(.........))..))))...)))).))))))))).)))).....)).......... ( -25.20, z-score = -2.07, R) >droSim1.chr3L 20728702 102 + 22553184 AUA-UUUCAAACAUCGCCUCUGAUACGUGCUCGUACUACUUACCGCC-AUAAAUCUUUUGAAGUAAUU-GUGGCUGGGGCAGGCUGUCUUUCUGCUUCUGACACA ...-...........((((((..((((....)))).......(((((-((((..((.....))...))-))))).)))).))))((((...........)))).. ( -21.60, z-score = -0.37, R) >consensus AUA_UUUCAAACAUCGCCUCUGAUACCUGCUCCUACUACUUACCGCU_AUAAAUCUUUUGAAGUAAUUUGUGGCUGGGGCAGGCUGUCUUUCUGCUCCUGACACA .....................................................................(((...((((((((.......))))))))...))). (-10.04 = -10.80 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:07 2011