| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,386,423 – 21,386,530 |
| Length | 107 |
| Max. P | 0.737618 |
| Location | 21,386,423 – 21,386,530 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.74 |
| Shannon entropy | 0.33931 |
| G+C content | 0.44044 |
| Mean single sequence MFE | -28.94 |
| Consensus MFE | -14.26 |
| Energy contribution | -16.74 |
| Covariance contribution | 2.48 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.737618 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21386423 107 + 24543557 UCAAUUCAGAUCAUCU-------------CGCGAUGCGAGUUUUCACUGCAAAUACCCAUUUCGUUUCACCCUUAUCCAUUCAUACUCGUAUGUGCAUGUGGAGCAGGGUGAUUCGAUAU ........((....((-------------(((...)))))...))................(((..(((((((..(((((.((((....)))).....)))))..)))))))..)))... ( -31.20, z-score = -3.02, R) >droSim1.chr3L 20720223 107 + 22553184 UCAAUUCAGAUCAUCU-------------CGCGAUGCGAGUUUUCACUGCAAAUACCCAUUUCGUUUCACCCUUUUCCAUUCAUACUCGUCUGUCCAUGUGGAGUAGGGUGAUUCAAUAU ........((....((-------------(((...)))))...))..................(..(((((((.((((((....((......))....)))))).)))))))..)..... ( -28.20, z-score = -3.33, R) >droSec1.super_11 1310615 107 + 2888827 UCAAUUCAGAUCAUCU-------------CGCUAUGCGAGUUUUCACUGCAAAUACCCAUUUCGUUUCACCCUUUUCCAUUCAUACUCGUAUGUCCAUGUGGAGUAGGGUGAUUCAAUAU ........((....((-------------(((...)))))...))..................(..(((((((.((((((.((((....)))).....)))))).)))))))..)..... ( -29.50, z-score = -4.43, R) >droYak2.chr3L 5064386 114 - 24197627 UCAAUUCAGAUCAUCUCGGACUGAAGCAUCGCGAUGCGAGCUUUCACUGCAAAUACCCAUUUCGUUUCGCCCCUUUCCAUUCACA------UAUCCACGUGGAGUAGGGUGAGUCGAUAU ....(((((.((......)))))))((.((((...))))))....................(((.(((((((..((((((.....------.......))))))..))))))).)))... ( -30.40, z-score = -1.50, R) >droEre2.scaffold_4784 21044160 105 + 25762168 UCAAUUCAGAUCAUCUGGGGCUGAACCAUCGCGAUGCGAGUUCUCGCUGCAAAUCCCCAUUGCGUUUC---------UAUUCACA------UAUCCACGUUGAGUAGGGUGAGUCGAUAU ........((((((((((((..((....))(((..((((....)))))))....)))))........(---------(((((((.------.......).)))))))))))).))..... ( -25.40, z-score = 0.40, R) >consensus UCAAUUCAGAUCAUCU_____________CGCGAUGCGAGUUUUCACUGCAAAUACCCAUUUCGUUUCACCCUUUUCCAUUCAUACUCGU_UGUCCAUGUGGAGUAGGGUGAUUCGAUAU ..................................(((.((......)))))............(..(((((((.((((((....((......))....)))))).)))))))..)..... (-14.26 = -16.74 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:06 2011