| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,384,400 – 21,384,508 |
| Length | 108 |
| Max. P | 0.813363 |
| Location | 21,384,400 – 21,384,508 |
|---|---|
| Length | 108 |
| Sequences | 7 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 58.78 |
| Shannon entropy | 0.80067 |
| G+C content | 0.41871 |
| Mean single sequence MFE | -27.56 |
| Consensus MFE | -8.35 |
| Energy contribution | -9.10 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21384400 108 - 24543557 AAAUGAGGAAGCUCAGAUUGUUAGCAAUUUGCAUAAAUAGCGGACGGCCCUUCGGGGCGAUACUGGAUUUUGGAGUUGGGUAUGGUUAUGGGAAUGGGUAUCGCUAUA--- ....(((....)))((((((....))))))......(((((((...(((((((..(((.(((((.((((....)))).))))).)))....))).)))).))))))).--- ( -33.30, z-score = -2.56, R) >droSim1.chr3L 20718230 110 - 22553184 AAAUGAGGAAGCUCGGAUUGUUUGCAAUUUGCAUAAAUAGCGGACAGCCCUUCGGGGCGAUACUGGAUUUGGGAGUUGGGUAUGGCUAUGGA-AUGGGUAUCGCCGCUAUA ....(((....)))((((((....))))))......(((((((.(.((((....))))((((((.(.(((.(.((((......)))).).))-)).)))))))))))))). ( -39.10, z-score = -2.90, R) >droSec1.super_11 1308630 107 - 2888827 AAAUGAGGAAGCUCGGAUUGUUUGCAAUUUGCAUAAAUAGCGGACAGCCCUUCGGGGCGAUACUGGAUUUGGGAGUUGGGUAUGGUUAUGGA-AUGGGUAUCGCUAUA--- ....(((....)))((((((....))))))......(((((((...((((((((..((.(((((.((((....)))).))))).))..))))-..)))).))))))).--- ( -33.00, z-score = -2.43, R) >droYak2.chr3L 5062331 96 + 24197627 AAAUGAGGAACCUCGGAUUGUUUGCAAUUUGCAUAAAUAGCGGACAGCCCUUCGGGGCGAUACUGAAUUUUGGAGUUGGGUAUGAGCAUCGG-CUUA-------------- ...((((....))))...(((((((.((((....)))).)))))))((((....)))).(((((.((((....)))).)))))((((....)-))).-------------- ( -31.20, z-score = -2.36, R) >droEre2.scaffold_4784 21042148 103 - 25762168 AAAUGAGGAACCUCGGAUUGUUUGCCAUUUGCAUAAAUAGCGGACAGCCCUUCGGGGCGAUACAGAAUUUUGGAGCUGGGUAUGGGUAAUGG-GUAGCGGUUUA------- ....(((....)))((((((((..((((((.((((..((((.....((((....))))....(((....)))..))))..)))).).)))))-..)))))))).------- ( -34.50, z-score = -2.42, R) >droVir3.scaffold_13049 9563912 95 - 25233164 ------------AUAUGUUAAUUGCGAAUGACAAAAACCGCUGA--ACUAAAUAUCUCUAAAUGGAAUUUUCAAUUUGAUAUUGAUUUUGAUAGUGGGCGUGGCACACA-- ------------...(((((........)))))....((((((.--....((((((...((.((((...)))).)).))))))........))))))..(((...))).-- ( -12.72, z-score = 1.00, R) >droGri2.scaffold_15110 17340342 83 - 24565398 ------------AAAUGGUAAUUACAAAUGGCAAUAACCGC--------GGAUAUAUAUAAAUGGAAUUUUCAAUUUGAUUUCGGUUUU--UGGUAAAGCUUAUA------ ------------....(((.(((.(....)..))).)))((--------...(((....((((.(((...((.....)).))).)))).--..)))..)).....------ ( -9.10, z-score = 1.10, R) >consensus AAAUGAGGAAGCUCGGAUUGUUUGCAAUUUGCAUAAAUAGCGGACAGCCCUUCGGGGCGAUACUGAAUUUUGGAGUUGGGUAUGGUUAUGGG_AUGGGUAUCGC_______ ...((((....)))).........((((((.......(((......((((....))))....))).......))))))................................. ( -8.35 = -9.10 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:42:05 2011