| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,001,979 – 6,002,093 |
| Length | 114 |
| Max. P | 0.931695 |
| Location | 6,001,979 – 6,002,093 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 64.02 |
| Shannon entropy | 0.65330 |
| G+C content | 0.38631 |
| Mean single sequence MFE | -22.50 |
| Consensus MFE | -11.82 |
| Energy contribution | -12.62 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.931695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6001979 114 + 23011544 CUAUUGCCAAAGUAACUAUGUUCCGGAAAUUACGAUUCACCCUUCGCUUUUGAUCAGAAAA-CACAAAUGCCUAUGGUAAACCCUGAUUUUCGGGACACACGUUGUAUAUUGAUA- ............((((..((((((((((((((.(.((.(((....((.((((.........-..)))).))....))).)).).))))))))))))))...))))..........- ( -23.10, z-score = -1.21, R) >droSim1.chr2L 5790302 114 + 22036055 CUAUUGCCAAAGUAACUAUGUUCCGGAAAUUACGAUUCACCCUCCGCUUUUGAUCAGAAAA-CACAAAUGCCUAUGGUAAACCCUUCUUUUCGGGACACCCGUUGUCUAUUGAUA- .......(((((((((..(((((((((((.........(((....((.((((.........-..)))).))....))).........)))))))))))...)))).)).)))...- ( -20.17, z-score = -0.42, R) >droSec1.super_5 4073087 114 + 5866729 CUAUUGCCAAAGUAACUAUGUUCUGGAAAUUACGAUUCACCCUCCGCUUUUGAUCAGAAAA-CACAAAUGCCUAUGGUAAAACCUGAUUUUCGGGACACCCGUUGUAUAUUGAUA- ............((((..((((((((((((((.(.((.(((....((.((((.........-..)))).))....))).)).).))))))))))))))...))))..........- ( -20.90, z-score = -0.61, R) >droEre2.scaffold_4929 6092815 110 + 26641161 CUAUUGCCAUUCGAACUAUGUUCCGGAAAUUACGAUUGAACCUCCGCUUUUGAUAAGAAAAACACAAAUGC-----GUAAAAGCUGAUUUCCGGGAUAUACGUUGCUUACCAGUA- .(((((.....(((..(((((((((((((((((((.......))(((.((((............)))).))-----).....).))))))))))))))))..))).....)))))- ( -24.70, z-score = -2.01, R) >triCas2.ChLG2 4608796 101 + 12900155 --------------UUUGGGCUCAAGUGGGGAGCUGCCAGUUUUUAUUGUGGGGCAGUCUC-UUCGAUUUUUAUCAAUAAUUACUAAUAUUUAAUGUGCCUGUUUUAAUGUAACAA --------------...((((.((...(((((((((((..............))))).)))-)))(((....)))...................)).))))............... ( -23.64, z-score = -1.13, R) >consensus CUAUUGCCAAAGUAACUAUGUUCCGGAAAUUACGAUUCACCCUCCGCUUUUGAUCAGAAAA_CACAAAUGCCUAUGGUAAAACCUGAUUUUCGGGACACCCGUUGUAUAUUGAUA_ ..................((((((((((((((......(((....((.((((............)))).))....)))......)))))))))))))).................. (-11.82 = -12.62 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:16 2011