| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,308,605 – 21,308,731 |
| Length | 126 |
| Max. P | 0.991487 |
| Location | 21,308,605 – 21,308,731 |
|---|---|
| Length | 126 |
| Sequences | 9 |
| Columns | 141 |
| Reading direction | reverse |
| Mean pairwise identity | 71.27 |
| Shannon entropy | 0.57795 |
| G+C content | 0.37695 |
| Mean single sequence MFE | -31.96 |
| Consensus MFE | -15.31 |
| Energy contribution | -14.57 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.991487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21308605 126 - 24543557 UAUUUA-UUUUAACAUGUUCUCUUAGCAGUCAUUCAAGACUCAAGUGCUGCCUUUAUGGG-U-UCAGAGCGGUGCAGUGCAC----AGAUAAUUCCA--------AAUCGAGCCCAUAGACUCAUUACUUAAAUCCUAUGU ......-.....(((((........(.((((......)))))(((((.((..((((((((-(-((......((((...))))----.(((.......--------.))))))))))))))..)).)))))......))))) ( -30.50, z-score = -2.01, R) >droPer1.super_33 684678 128 - 967471 UAUUUA-UUUUAA--UGUUUU-----CACUCGUCCAACCCCCAAGUGCUGCCUGUAUGGG-U-UCUGUACGGUGCAGUGCAC---AAGACAAUUCCAUAAUAAUGCAUGGAACCCAUAAAUGCAAUACUUAUCCCAAAGAA ......-......--......-----................(((((.(((...((((((-(-(((((...((((...))))---...)))....(((........))))))))))))...))).)))))........... ( -27.80, z-score = -1.00, R) >dp4.chrXR_group6 12663175 128 - 13314419 UAUUUA-UUUUAA--UGUUUU-----CACUCGUCCAAUCCCCAAGUGCUGCCUGUAUGGG-U-UCUGUACGGUGCAGUGCAC---AAGAUAAUUCCAUAAUAAUGCAUGGAACCCAUAGAUGCAGCACUUAUCCCAAAGAA ......-......--......-----................(((((((((.(.((((((-(-(((((.((((((...))))---..((....))........)).)))))))))))).).)))))))))........... ( -36.80, z-score = -3.26, R) >droAna3.scaffold_13337 10137938 126 - 23293914 UAUUUA-UUUUAAAACGUUUUCGAAGCUGUC-CUCAAAGCGAAAGUGCUGGCUUUAUGGGUU-UUCAACCUGUGCAGUGCAC----AGAAUAUUCCA--------CAAAUAAUUCAUAAACUCAGUACUUACCUGCAAUAU ......-........((((((.((.......-.)))))))).((((((((..(((((((((.-......((((((...))))----))..((((...--------..)))))))))))))..))))))))........... ( -28.90, z-score = -2.20, R) >droEre2.scaffold_4784 20975849 126 - 25762168 UAUUUA-UUUUAACUUGUUCUAUUAACAGUCAUUCAAGGCUCAAGUGCUGACUUUAUGGG-U-UCAGAGCGGUGCAGUGCAC----AGAUAAUUCCA--------AAUCGAGCCCAUAGACUUAUUACUUAAACCCUAUGA ......-.......(((((.....)))))....((((((...(((((.(((.((((((((-(-((......((((...))))----.(((.......--------.)))))))))))))).))).)))))....))).))) ( -28.70, z-score = -1.41, R) >droYak2.chr3L 4976183 126 + 24197627 UAUUUA-UUUUAACAUGUUCUAUUAGCAAUUAUCCAAUGCUUAAGUGCUGACUUUAUGGG-U-UCAGAGCGGUGCAGUGCAC----AGAUAAUUCCA--------AAUCGAGCCCAUAGACUUAUUACUUAAAUCCAAUGC ......-..................(((.........)))(((((((.(((.((((((((-(-((......((((...))))----.(((.......--------.)))))))))))))).))).)))))))......... ( -28.40, z-score = -1.55, R) >droSec1.super_11 1245667 126 - 2888827 UAUUUA-UUUUAACAUGUUCUCUUAGCAGUCAUCCAAGACUCAAGAGCUGACUUUAUGGG-U-UUAGAGCUGUGCAGUGCAC----AGAUAAUUCCA--------AAUCGAGCCCAUAGACUCAUUACUUAAAUCCAAUGU ......-.....((((...(((((.(.((((......)))))))))).(((.((((((((-(-((.((.((((((...))))----)).........--------..))))))))))))).))).............)))) ( -31.20, z-score = -2.51, R) >droSim1.chr3L 20653129 126 - 22553184 UAUUUA-UUUUAACAUGUUCUCUUAGCAGUCAUCCAAGACUCAAGUGCUGACUUUAUGGG-U-UCAGAGCUGUGCAGUGCAC----GGAUAAUUCCA--------AAUCGAACCCAUAGACUCAUUACUUAAAUCCAAUGU ......-.....((((.........(.((((......)))))(((((.(((.((((((((-(-((......((((...))))----(((....))).--------....))))))))))).))).))))).......)))) ( -35.00, z-score = -3.68, R) >droVir3.scaffold_13049 9493438 137 - 25233164 --UUUAUUUUUUAGGUUUAAUUUUUAAGUUUGAUUGCUGGAGAAAUGCUGACUCUAUGUGCUGCCCAAAAUGUGCAGUGCGCAAUGAAAUAAGUUCAAAUU--UCUGUGGCGCUCAUAGAUUCAGCGCUUUUUCGCAUAAU --........(((..((((.....))))..))).(((.((((((.((((((.((((((.((.(((((...(((((...)))))..(((((........)))--)))).))))).)))))).)))))).))))))))).... ( -40.30, z-score = -2.62, R) >consensus UAUUUA_UUUUAACAUGUUCUCUUAGCAGUCAUCCAAGGCUCAAGUGCUGACUUUAUGGG_U_UCAGAGCGGUGCAGUGCAC____AGAUAAUUCCA________AAUCGAGCCCAUAGACUCAUUACUUAAAUCCAAUGU ..........................................(((((.(((.((((((((...........((((...)))).....((....)).................)))))))).))).)))))........... (-15.31 = -14.57 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:59 2011