Locus 8244

Sequence ID	dm3.chr3L
Location	21,272,688 – 21,272,808
Length	120
Max. P	0.714458

overview

Window 8

Location	21,272,688 – 21,272,808
Length	120
Sequences	14
Columns	120
Reading direction	reverse
Mean pairwise identity	78.93
Shannon entropy	0.48532
G+C content	0.50927
Mean single sequence MFE	-36.53
Consensus MFE	-16.71
Energy contribution	-16.29
Covariance contribution	-0.42
Combinations/Pair	1.48
Mean z-score	-1.75
Structure conservation index	0.46
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.49
SVM RNA-class probability	0.714458
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21272688 120 - 24543557
CCAGAAGUUCUACCAGGAGUCACUGGACAAUCCGGCCGAGUUCUGGUCCCGCGUGGCCAAGCAGUUCCACUGGGAAACGCCAGCCGAUCAGGAUAAGUUCCUCAAGUACAACUUCAACAU
...((((((.(((.(((((.(.((((.....))))....(((((((((..((.((((....(((.....)))(....))))))).)))))))))..))))))...))).))))))..... ( -39.60, z-score =  -2.21, R)
>droGri2.scaffold_15110 12577134 120 + 24565398
CACGAAAUUCUAUCAGGAAUCCUUGGACAAUCCAGCGGAGUUUUGGUCGCGUGUCGCUAAACAAUUCCACUGGGAAACGCCCGCAGAUCCCACGAAAUUCAUGCAAUACAAUUUCAAUAU
...((((((..(((((((.(((((((.....)))).))).)))))))...((((.((.......(((...(((((...(....)...))))).)))......)).))))))))))..... ( -26.22, z-score =  -0.38, R)
>droMoj3.scaffold_6680 8226079 120 - 24764193
CACGAAAUUCUACAAGGAGUCCUUGGACAAUCCCGCUGAGUUUUGGUCUCGCGUAGCGAAACAAUUUCACUGGGAGACGCCAGCGGAUCCCUCCAAAUUCAUGCAAUACAAUUUCAAUAU
...((((((.((...((((((....)))..))).(((((((((.((..((((...))))............((((..((....))..)))).))))))))).))..)).))))))..... ( -31.90, z-score =  -1.79, R)
>droVir3.scaffold_13049 20519269 120 - 25233164
CAAGAAAUUCUAUCAGGAGUCCUUGGACAAUCCGACCGAGUUUUGGUCGCGCGUUGCGAAACAAUUUCACUGGGAAACGCCAGCGGAUCCCUCAAAAUUCAUGCAAUACAAUUUCAACAU
...((((((.(((..((((((....)))..)))....(((((((((((((.....))))............((((..((....))..))))))))))))).....))).))))))..... ( -32.10, z-score =  -1.87, R)
>droWil1.scaffold_180955 888460 120 - 2875958
UAAGAAAUUCUAUCAGGAAUCAUUGGAUAAUCCUUCGGACUUUUGGUCACGUGUGGCCAAACAAUUCCAUUGGGAAACACCAGCUGAUCCUGACAAGUUUUUGCAAUAUAAUUUCAAUAU
...((((((.((((((((.(((((((....((((..(((..((((((((....))))))))....)))...))))....)))).)))))))))...((....))..)).))))))..... ( -34.10, z-score =  -3.22, R)
>droPer1.super_33 658093 120 - 967471
CAAGAAGUUCUACCAGGAGUCCCUCGACAAUCCUGCAGAGUUCUGGUCCCGUGUGGCCAAGCAGUUCCACUGGGAGACGCCCGCCGAUCAGGAAAAGUUUCUGCAAUACAACUUCAACAU
...((((((.((..(((((((....)))..))))((((((((((((((..(((.(((....(((.....)))(....))))))).)))))))).....))))))..)).))))))..... ( -37.80, z-score =  -1.95, R)
>dp4.chrXR_group6 12636623 120 - 13314419
CAAGAAGUUCUACCAGGAGUCCCUCGACAAUCCUGCAGAGUUCUGGUCCCGUGUGGCCAAGCAGUUCCACUGGGAGACGCCCGCCGAUCAGGAAAAGUUUCUGCAAUACAACUUCAACAU
...((((((.((..(((((((....)))..))))((((((((((((((..(((.(((....(((.....)))(....))))))).)))))))).....))))))..)).))))))..... ( -37.80, z-score =  -1.95, R)
>droAna3.scaffold_13337 14869049 120 + 23293914
CAAGAAGUUCUACCAGGAGUCCUUGGACGAUCCGGCGGAGUUCUGGUCCCGCGUGGCCAAGCAGUUCCACUGGGAGACGCCCGCCGACCCUCAGAAGUUUCUCCAAUACAACUUCAACAU
...((((((.((((.((((((....)))..))))).((((((((((((..(((.(((....(((.....)))(....))))))).))))...))))....))))..)).))))))..... ( -37.60, z-score =  -0.70, R)
>droEre2.scaffold_4784 20948754 120 - 25762168
CCAGAAGUUCUACCAGGAGUCGCUGGACAAUCCGGCCGAGUUUUGGUCUCGCGUGGCCAAGCAGUUCCACUGGGAAACGCCCGCCGACCCAGAGAAGUUUCUCAAGUAUAACUUCAACAU
...((((((.(((.((((.(((((((.....)))).))).))))((((..(((.(((....(((.....)))(....))))))).))))..((((....))))..))).))))))..... ( -41.50, z-score =  -2.48, R)
>droYak2.chr3L 4952546 119 + 24197627
UCAGAAGUUCUACCAGGAGUCGCUGGACAAUCCGGCCGAGUUCUGGUCCCGCGUGGCCAAGCAGUUCCACU-GGAGACGCCCGCCGACCCGGAGAAGUUCCUAAAGUACAACUUCAACAU
...(((.(((((((((((.(((((((.....)))).))).))))))).(((.(((((...((..((((...-))))..))..))).)).))))))).))).................... ( -40.90, z-score =  -1.88, R)
>droSec1.super_11 1218894 120 - 2888827
CCAGAAGUUCUACCAGGAGUCGCUGGACAAUCCGGCCGAGUUCUGGUCCCGCGUGGCCAAGCAGUUCCACUGGGAAACGCCCGCAGAUCCGGAGAAGUUCCUCAAGUACAACUUCAACAU
...((((((.(((.((((((((((((.....)))).))).((((((..(.(((.(((....(((.....)))(....))))))).)..))))))...)))))...))).))))))..... ( -42.80, z-score =  -2.31, R)
>droSim1.chr3L 20626253 120 - 22553184
CCAGAAGUUCUACCAGGAGUCGCUGGACAACCCAGCCGAGUUCUGGUCCCGCGUGGCCAAGCAGUUCCAUUGGGAAACGCCCGCAGAUCCGGAGAAGUUCCUCAAGUACAACUUCAACAU
...((((((.(((.((((((((((((.....)))).))).((((((..(.(((.(((.......((((....))))..)))))).)..))))))...)))))...))).))))))..... ( -40.80, z-score =  -2.43, R)
>triCas2.chrUn_22 130777 120 - 327011
CCAGGAAAUGUACCAGAAAUCGAUAGACAACCCUGAGGAGUUCUGGGGUGAAAUCGCCAAGCAAUUCUACUGGGAGACCCCGAUCGACAUUAACUCGUUUUUUCGCUACAAUUUUGACAU
...((((.(((.((((((.((..(((......)))..)).))))))((((....))))..))).))))...((....)).(((..(((........)))...)))............... ( -26.60, z-score =   0.19, R)
>anoGam1.chr2L 15204916 120 + 48795086
CCGCGAGUUUUACCAGCAGUCGCUGGAGAAUCCGGGCCAGUUCUGGGCCAAUGUGGCCAAGCAGUUCCACUGGGAGACGCCGUACGAUCCGAAGAACUUCUUCUCGUACAACUUCGACAU
...((..((((.(((((....)))))))))..))(((((((.(((((((.....))))...)))....))))(....))))((((((...((((.....))))))))))........... ( -41.70, z-score =  -1.52, R)
>consensus
CAAGAAGUUCUACCAGGAGUCCCUGGACAAUCCGGCCGAGUUCUGGUCCCGCGUGGCCAAGCAGUUCCACUGGGAAACGCCCGCCGAUCCGGAGAAGUUCCUCCAAUACAACUUCAACAU
...((((((..(((((((.((................)).)))))))...((((..((.((........)).))..)))).............................))))))..... (-16.71 = -16.29 +  -0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:59 2011