| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,254,857 – 21,254,952 |
| Length | 95 |
| Max. P | 0.589510 |
| Location | 21,254,857 – 21,254,952 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 77.14 |
| Shannon entropy | 0.38748 |
| G+C content | 0.51571 |
| Mean single sequence MFE | -25.52 |
| Consensus MFE | -17.42 |
| Energy contribution | -17.90 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.589510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21254857 95 - 24543557 UCGAGUGUUGUUGUGUGUUGUUGUAUGUUGUGGUCUGGCGGUAGCCGCCGCUGGCGGUUUCCAAACAAACAAUCACAACACAAAUGACGAAAGCC- .....(((..((.((((((((.((.((((...((.(((....(((((((...))))))).))).)).)))))).))))))))))..)))......- ( -31.60, z-score = -1.41, R) >droSim1.chr3L 20607817 88 - 22553184 UCGUGUGUUGUUGUGUGU-------UGUUGUGGUCUGGCGGUAGCCGCCGCCGGCGGUUUCCAAACAAACAAUCACAACACUAAUGACGAAAGCC- ((((.((.(((((((.((-------((((.(((.((((((((....))))))))......)))....))))))))))))).))...)))).....- ( -32.40, z-score = -2.05, R) >droSec1.super_11 1200624 78 - 2888827 ----------UCGUGUGU-------UGUUGUGGUCUGGCGGUAGCCCCCGCCGGCGGUUUCCAAACAAACAAUCACAACACUAAUGACGAAAGCC- ----------((((.((.-------((((((((((((((((......)))))))..((((......)))).))))))))).))...)))).....- ( -25.80, z-score = -1.54, R) >droYak2.chr3L 4935058 75 + 24197627 -------------CGUGU-------UGUUGUGGUCUGGCGGUAGCCGCCGCCGGCGGUUUCCAAACAAACAAUCACAACACUAAUGACGAAAGCC- -------------.((((-------(((.((.((.((..((.(((((((...))))))).))...)).)).)).)))))))......(....)..- ( -25.70, z-score = -1.52, R) >droEre2.scaffold_4784 20931261 75 - 25762168 -------------UGUGU-------UGUUGUGGUCUGGCGGUAGCCGCCGCCGGCGGUUUCCAAACAAACAAUCACAACACUAAUGACGAAAGCC- -------------.((((-------(((.((.((.((..((.(((((((...))))))).))...)).)).)).)))))))......(....)..- ( -25.40, z-score = -1.49, R) >droWil1.scaffold_180698 5678046 72 + 11422946 --------------UUGUU------UAUUGUGGUUU--UUGUGGUAGCCGCCGGCAAUUUCAAAACACACACACAC-ACAC-AAUUCCCCAGCCCA --------------((((.------...((((((((--(((..((.(((...))).))..))))).)).))))...-..))-))............ ( -12.20, z-score = 0.53, R) >consensus _____________UGUGU_______UGUUGUGGUCUGGCGGUAGCCGCCGCCGGCGGUUUCCAAACAAACAAUCACAACACUAAUGACGAAAGCC_ .........................(((((((((.((..((.(((((((...))))))).))...))....)))))))))................ (-17.42 = -17.90 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:57 2011