| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,254,321 – 21,254,413 |
| Length | 92 |
| Max. P | 0.554745 |
| Location | 21,254,321 – 21,254,413 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 74.09 |
| Shannon entropy | 0.41272 |
| G+C content | 0.33132 |
| Mean single sequence MFE | -17.09 |
| Consensus MFE | -10.77 |
| Energy contribution | -10.15 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554745 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21254321 92 - 24543557 -------ACUAUAAGAAACUUUAUC-GUGAGUCCAUUCCUAAAAAUAUUUACUCUAUCAACAUGUGAUAACGUAAUCCCAGAAUGACUAACCCAUUUUGG -------.......(((((((....-..))))...)))..........((((..(((((.....)))))..))))..((((((((.......)))))))) ( -12.80, z-score = -1.30, R) >droYak2.chr3L 4934461 100 + 24197627 UAUUUAUUCUAUUUGUGUAUUGAUUGGUGAGUCUAUUCCUGAAAAUAUUUGCUCUAUCAAAAUUGGAUGAGCUAAUCUCGGAGUGGCUGACCUAUUUUGG .........................(((.((.(((((((.((....(((.((((.(((.......))))))).))).))))))))))).)))........ ( -22.00, z-score = -1.61, R) >droSec1.super_11 1200106 92 - 2888827 -------UUUAAAAGAGU-UACAUAUAUGCGUCAUAUAUACAAAAUAUUUACUCUAUCUACAUGUGAUAAGGUAAUCCCAGAAUGACUGACCCAUUUUGG -------...........-...(((((((...))))))).........((((..((((.......))))..))))..((((((((.......)))))))) ( -16.50, z-score = -1.40, R) >droSim1.chr3L 20607255 93 - 22553184 -------ACUUUGAGAAACUUUAUCGGUGAGUCCAUUCCUAAAAAUAUUUACUCUAUCUACAUGUGAUAAGGUAAUCCCAGAAUGACUGACCCAUUUUGG -------..................(((.((((.((((..........((((..((((.......))))..)))).....)))))))).)))........ ( -17.06, z-score = -0.72, R) >consensus _______ACUAUAAGAAACUUUAUCGGUGAGUCCAUUCCUAAAAAUAUUUACUCUAUCAACAUGUGAUAAGGUAAUCCCAGAAUGACUGACCCAUUUUGG ................................................(((((.((((.......)))).)))))..((((((((.......)))))))) (-10.77 = -10.15 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:57 2011