| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,244,736 – 21,244,827 |
| Length | 91 |
| Max. P | 0.922411 |
| Location | 21,244,736 – 21,244,827 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 82.73 |
| Shannon entropy | 0.33803 |
| G+C content | 0.50778 |
| Mean single sequence MFE | -32.50 |
| Consensus MFE | -19.19 |
| Energy contribution | -20.26 |
| Covariance contribution | 1.07 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.922411 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21244736 91 + 24543557 UUUGCUUGGGUGGUGCUGCAGCAACGA--CUCCGUGUGUUGAUGAGCCUAUUAAAUGCUGUUGAUGGCUCUCAGCGGAGACCGG-----AGCAAAAAA- (((((((.((((.(((....))).)..--((((((....(((.(((((.(((((......)))))))))))))))))))))).)-----))))))...- ( -36.90, z-score = -3.60, R) >droSim1.chr3L 20597150 91 + 22553184 UUUGCUUGGGUGGAGCUGCAGCAACGA--CUCCGUGUGUUGAUGAGCCUAUUAAAUGCUGUUGAUGGCUCUCAGCGGAGACCGG-----AGCGAAAAA- (((((((.((((..((....))..)..--((((((....(((.(((((.(((((......)))))))))))))))))))))).)-----))))))...- ( -35.90, z-score = -3.23, R) >droSec1.super_11 1190642 91 + 2888827 UUUGCUUGGGUGGAGCUGCAGCAACGA--CUCCGUGUGUUGAUGAGCCUAUUAAAUGCUGUUGAUGGCUCUCAGCGGAGACCGG-----AGUGAAAAA- ((..(((.((((..((....))..)..--((((((....(((.(((((.(((((......)))))))))))))))))))))).)-----))..))...- ( -33.70, z-score = -2.89, R) >droYak2.chr3L 4922638 92 - 24197627 UUUGCUUGGGUGGUGCUGCAGCCAAGA--CUCCGUGUGUUGAUGAGCCUAUUAAAUGCUGUUGAUGGCUCUCAGCGGAGACCGA-----AACAAAAAAA ((((.((.((((((......)))....--((((((....(((.(((((.(((((......)))))))))))))))))))))).)-----).)))).... ( -30.60, z-score = -2.40, R) >droEre2.scaffold_4784 20921221 91 + 25762168 UUUGCUUGGGUGGUGCUGCAGCAACGA--CUCCGUGUGUUGAUGAGCCUAUUAAAUGCUGUUGAUGGCUCUCAGCGGAGACCGG-----AGCCAAAAG- ...((((.((((.(((....))).)..--((((((....(((.(((((.(((((......)))))))))))))))))))))).)-----)))......- ( -33.50, z-score = -2.17, R) >droAna3.scaffold_13337 14841613 84 - 23293914 UCUGCUUGGGUGGAGCU--------------CCGUGUGUUGAUGAGCCUAUUAAAUGCCGUUGAUGGCUCUCGCCGGAGCCAGAUGAUGAACAAAAAA- ((..(....)..))(((--------------(((.(((.....(((((.(((((......)))))))))).)))))))))..................- ( -27.40, z-score = -2.22, R) >dp4.chrXR_group6 12608476 94 + 13314419 CUCUCUGAGGUGGAGUUACCACGACGAGGCUCUGUGUGUUGAUGAGCCUAUUAAAUGCUGUUGAUGGCUUUCAGCUGAGACAGAGGC--AGCGGCA--- ....(((..((((.....)))).....(.((((((.((((((.(((((.(((((......)))))))))))))))..).)))))).)--..)))..--- ( -29.50, z-score = -0.15, R) >consensus UUUGCUUGGGUGGAGCUGCAGCAACGA__CUCCGUGUGUUGAUGAGCCUAUUAAAUGCUGUUGAUGGCUCUCAGCGGAGACCGG_____AGCAAAAAA_ ((((((....(((.((....)).......((((((....(((.(((((.(((((......))))))))))))))))))).)))......)))))).... (-19.19 = -20.26 + 1.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:56 2011