| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,227,827 – 21,227,926 |
| Length | 99 |
| Max. P | 0.952615 |
| Location | 21,227,827 – 21,227,926 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 72.15 |
| Shannon entropy | 0.49233 |
| G+C content | 0.48616 |
| Mean single sequence MFE | -29.28 |
| Consensus MFE | -13.90 |
| Energy contribution | -14.82 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.952615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21227827 99 + 24543557 AUCUGAAUCCAAAUCCAAGAGCCAGACCCCGUUGCC---CGCUGUAGCGA-UUGCCCAUUGUUGCCGCUUUUUGC-UAGCUGGUUGCUUGGUUGUUCAGAUGUU ((((((((......(((((((((((.....((....---.((.(((((((-(.....)))))))).)).....))-...)))))).)))))..))))))))... ( -31.60, z-score = -3.15, R) >droSim1.chr3L 20587575 99 + 22553184 AUCUGAAUCCAAAUCCAAGAGCCAGACCCCGUUGCC---CGCUGUAGCGA-AUGCCCAUUGUUGCCGCUUGUAGC-UAGCUGGUUGCUUGGUUGUUCAGAUGUU ((((((((......(((((((((((.....(((((.---.((.(((((((-.......))))))).))..)))))-...)))))).)))))..))))))))... ( -35.60, z-score = -4.31, R) >droSec1.super_11 1181094 99 + 2888827 AUCUGAAUCCAAAUCCAAGAGCCAGACCCCGUUGCC---CGCUGUAGCGA-AUGCCCAUUGUUGCUGCUUGUUGC-UAGCUGGUUGCUUGGUUGUUCAGAUGUU ((((((((......(((((((((((.....((.((.---.((.(((((((-.......))))))).))..)).))-...)))))).)))))..))))))))... ( -32.30, z-score = -3.09, R) >droYak2.chr3L 4900009 93 - 24197627 AUCCGCAUCCAAAUCCAAGAGCCAGACCCCGUUGCU---CGCUGUAGCGA-AUGCUCAUUGUUGCUGCUUCUUGC-UCGUUG-UUGCUAGCUGGUUGUG----- ...((((.(((.......((((..(....)...)))---)((((((((((-..((.....((....)).....))-...)))-)))).)))))).))))----- ( -24.40, z-score = -0.64, R) >droWil1.scaffold_180698 5649280 103 - 11422946 GUCAGACAUUCAGUCGGAGAGCGAGCAACCAAUUCGAGACACUUUGAUUAUGUGCGAAUUGUAGUUGUUUUUUUUAUUGUUGCUGUUGUUCUUGCUUUGAAUU- .......((((((...((((((((((((((((((((...(((.........)))))))))).................))))))..)))))))...)))))).- ( -22.52, z-score = 0.04, R) >consensus AUCUGAAUCCAAAUCCAAGAGCCAGACCCCGUUGCC___CGCUGUAGCGA_AUGCCCAUUGUUGCUGCUUGUUGC_UAGCUGGUUGCUUGGUUGUUCAGAUGUU .(((((((......(((((((((((.....((........((.(((((((........))))))).)).....))....)))))).)))))..))))))).... (-13.90 = -14.82 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:53 2011