| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,226,231 – 21,226,322 |
| Length | 91 |
| Max. P | 0.774398 |
| Location | 21,226,231 – 21,226,322 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 94.91 |
| Shannon entropy | 0.08262 |
| G+C content | 0.46447 |
| Mean single sequence MFE | -29.02 |
| Consensus MFE | -22.94 |
| Energy contribution | -25.34 |
| Covariance contribution | 2.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.774398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21226231 91 + 24543557 CUUUAAUUAGACUUGCCACAGACUUUGUCGAAUCGGAUGGGGUUAUUAUGGCUUAUGGGUUGUGGGCUGUGGCAAUGCUGCAGCUGGCAAU ...........((.((((..(((((..((......))..)))))....))))....))(((((.(((((..((...))..))))).))))) ( -31.90, z-score = -2.86, R) >droSim1.chr3L 20585978 91 + 22553184 CUUUAAUUAGACUUGCCACAGACUUUGUCGAAUCGGAUGGGGUUAUUAUGGCUUAUGGGUUGUGGGCUGUGGCAAUGCUGCAGCUGGCAAU ...........((.((((..(((((..((......))..)))))....))))....))(((((.(((((..((...))..))))).))))) ( -31.90, z-score = -2.86, R) >droSec1.super_11 1179491 91 + 2888827 CUUUAAUUAGACUUGCCACAGACUUUGUCGAAUCGGAUGGGGUUAUUAUGGCUUAUGGGUUGUGGGCUGUGGCAAUGCUGCAGCUGGCAAU ...........((.((((..(((((..((......))..)))))....))))....))(((((.(((((..((...))..))))).))))) ( -31.90, z-score = -2.86, R) >droYak2.chr3L 4898411 84 - 24197627 CUUUUAUUAGACUUGCCACAGACUUUGUCGAAUCGGAUGGGGUUAUUAUGGCUUAUGGGUU-------GUGGCAAUGCUGCAGCUGGCAAU ............(((((...(((((..((......))..))))).............((((-------(..((...))..)))))))))). ( -24.70, z-score = -1.59, R) >droEre2.scaffold_4784 20910214 84 + 25762168 CUUUAAUUAGACUUGCCACAGACUUUGUCGAAUCGGAUGGGGUUAUUAUGGCUUAUGGGUU-------GUGGCAAUGCUGCAGCUGGCAAU ............(((((...(((((..((......))..))))).............((((-------(..((...))..)))))))))). ( -24.70, z-score = -1.58, R) >consensus CUUUAAUUAGACUUGCCACAGACUUUGUCGAAUCGGAUGGGGUUAUUAUGGCUUAUGGGUUGUGGGCUGUGGCAAUGCUGCAGCUGGCAAU ...........((.((((..(((((..((......))..)))))....))))....))(((((.(((((..((...))..))))).))))) (-22.94 = -25.34 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:52 2011