| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,220,816 – 21,220,913 |
| Length | 97 |
| Max. P | 0.976556 |
| Location | 21,220,816 – 21,220,913 |
|---|---|
| Length | 97 |
| Sequences | 13 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 77.84 |
| Shannon entropy | 0.43229 |
| G+C content | 0.47386 |
| Mean single sequence MFE | -28.89 |
| Consensus MFE | -15.84 |
| Energy contribution | -15.51 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.976556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21220816 97 + 24543557 ------------CCCUGCUGCCGGUAGUCAAUUUUAAUGCAAAUUCAGACUUUAAUUUGCAUUUCUUUGACACACCGGAGGACUCGUCCACCCAAGGGGCCUACAGUGA-------- ------------((((....(((((.(((((....((((((((((........))))))))))...)))))..))))).(((....))).....))))...........-------- ( -31.60, z-score = -3.17, R) >droSim1.chr3L 20580223 97 + 22553184 ------------CCCUGCUGCCGGCAGUCAAUUUUAAUGCAAAUUCAGACUUUAAUUUGCAUUUCUUUGACACACCGGAGGACUCGUCCACCCAAGGGGCCUACAGUGA-------- ------------....((((..(((.(((((....((((((((((........))))))))))...)))))...((((.(((....))).))...)).)))..))))..-------- ( -30.70, z-score = -2.81, R) >droSec1.super_11 1174078 97 + 2888827 ------------CCCUGCUGCCGGCAGUCAAUUUUAAUGCAAAUUCAGACUUUAAUUUGCAUUUCUUUGACACACCGGAGGACUCGUCCACCCAAGGGGCCUACAGUGA-------- ------------....((((..(((.(((((....((((((((((........))))))))))...)))))...((((.(((....))).))...)).)))..))))..-------- ( -30.70, z-score = -2.81, R) >droYak2.chr3L 4892831 97 - 24197627 ------------CCCUGCUCCCGGUGGUCAAUUUCAAUGCAAAUUCAGACUUUAAUUUGCAUUUCUUUGACACACCGGAGGACUCGUCCACCCAAGGGGCCUACAGUGA-------- ------------((((....(((((((((((....((((((((((........))))))))))...))))).)))))).(((....))).....))))...........-------- ( -35.60, z-score = -3.90, R) >droEre2.scaffold_4784 20904855 97 + 25762168 ------------CUCUGCUCCCGGUGGUCAAUUUUAAUGCAAAUUCAGACUUUAAUUUGCAUUUCUUCGACACACCGGAGGACUCGUCCACCCAAGGGGCCUACAGUGA-------- ------------....((.((((((((((......((((((((((........)))))))))).....))).))))((.(((....))).))...))))).........-------- ( -31.60, z-score = -3.01, R) >droAna3.scaffold_13337 14814564 97 - 23293914 ------------CAUUGCUGGCAGGAGUCAAUUUCAAUGCAAAUUCGGACUUUAAUUUGCAUUUCUUUGACACACCGGAGGACUCGUCCACACAAGGUGCCUACAGCGA-------- ------------..((((((..(((.(((((....((((((((((........))))))))))...))))).((((.(.(((....))).)....))))))).))))))-------- ( -33.30, z-score = -4.14, R) >dp4.chrXR_group6 12591188 97 + 13314419 ------------CACUUCUCCCAGAAGUCAAUUUCGAUGCGAAUUCCGAUUUCAAUUUGCAUUUCUUUGACACGCCCGAGGACUCCUCGACCCAAGGAGCCUACAGCGA-------- ------------..............(((((....((((((((((........))))))))))...))))).(((...(((.(((((.......))))))))...))).-------- ( -29.10, z-score = -3.76, R) >droPer1.super_33 612192 97 + 967471 ------------CACUUCUCCCAGAAGUCAAUUUCGAUGCGAAUUCCGAUUUCAAUUUGCAUUUCUUUGACACGCCCGAGGACUCCUCGACACAAGGAGCCUACAGCGA-------- ------------..............(((((....((((((((((........))))))))))...))))).(((...(((.(((((.......))))))))...))).-------- ( -29.10, z-score = -3.82, R) >droWil1.scaffold_180698 5640540 109 - 11422946 AAGGAGAAAUCAAAGCAUUGCCCCAGGUCAAUUUCAAUGCAAAUUCAGAUUUCAAUUUGCAUUUCUUUGAUACACCAGAGGAUUCGUCUACUCAAGGUGCAUAUAGUGA-------- ...((....))....(((((......(((((....((((((((((........))))))))))...))))).((((.(((..........)))..))))....))))).-------- ( -22.10, z-score = -0.41, R) >droMoj3.scaffold_6680 8171369 94 + 24764193 ---------------CAUUGCCAGAAGUCGGUUUCGAUGCAAAUUCAGAUUUCAAUUUGCAUUUCUUUGACACGCCCGAGGAUUCAUCGACGCAAGGCGCCUUCAGCGA-------- ---------------....(((....((((((...((((((((((........))))))))))((((((.......))))))...))))))....)))((.....))..-------- ( -25.10, z-score = -0.87, R) >droVir3.scaffold_13049 20458885 94 + 25233164 ---------------CACUGCCGGAAGUCAGUUUUGAUGCAAAUUCUGAUUUCAAUUUGCAUUUCUUUGACACGCCCGAAGAUUCAUCCACACAAGGCGCAUAUAGCGA-------- ---------------....(((((..(((((....((((((((((........))))))))))...)))))...)).((....))..........)))((.....))..-------- ( -22.20, z-score = -1.24, R) >droGri2.scaffold_15110 12524433 97 - 24565398 ------------CAGCGUUGCCAGAAGUCAGUUUCGAUGCAAAUUCCGAUUUUAAUUUGCAUUUCUUUGACACGCCCGAAGAUUCAUCGACGCAAGGCGCUUACAGCGA-------- ------------...(((((..((..(((((....((((((((((........))))))))))...))))).((((((..((....))..))...))))))..))))).-------- ( -26.30, z-score = -1.58, R) >anoGam1.chr2L 15171443 102 - 48795086 ---------------ACCUGGCGGAGGUACACUUCGACACCGGGUCGGAGUUCAAUUUGCACUUUUUCGAUACGCCCGAAGACUCGAACACGCAGAGUGGCUUCAGCGAUCAUGAGU ---------------.....(((((.....((((((((.....))))))))....)))))((((....(((.(((..((((((((.........))))..)))).))))))..)))) ( -28.20, z-score = 0.14, R) >consensus ____________CACUGCUGCCGGAAGUCAAUUUCAAUGCAAAUUCAGACUUUAAUUUGCAUUUCUUUGACACACCCGAGGACUCGUCCACCCAAGGGGCCUACAGCGA________ ..........................(((((....((((((((((........))))))))))...))))).(((...(((..((..........))..)))...)))......... (-15.84 = -15.51 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:51 2011