Locus 8233

Sequence ID dm3.chr3L
Location 21,197,751 – 21,197,823
Length 72
Max. P 0.879192
window11315 window11316

overview

Window 5

Location 21,197,751 – 21,197,823
Length 72
Sequences 3
Columns 74
Reading direction forward
Mean pairwise identity 78.73
Shannon entropy 0.29443
G+C content 0.27851
Mean single sequence MFE -15.97
Consensus MFE -7.98
Energy contribution -10.10
Covariance contribution 2.12
Combinations/Pair 1.18
Mean z-score -2.59
Structure conservation index 0.50
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.61
SVM RNA-class probability 0.761201
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21197751 72 + 24543557
UUAAUAAUCAAUUGAGUACAACAACUA-UAGCUAUAGUAAUAUGUACUAACGUGCUGUACUCAAGAAUUCAUU-
...........(((((((((...((((-(....))))).....((((....))))))))))))).........- ( -18.50, z-score =  -4.01, R)
>droSec1.super_11 1151266 73 + 2888827
UUAAUAAUCAAUUGAGUACAACAACUAAUGGUUAUAGUAAUAUGUACUAACGUGCUGUACUCAAGAAUUCAUU-
...........(((((((((...((((.......)))).....((((....))))))))))))).........- ( -16.90, z-score =  -3.05, R)
>droYak2.chr3L 4869543 74 - 24197627
UUAAAAACUAAUGGCGUACAACAACUACUGGCUAAUGUAAUAUGUAGUAAAAUUUUGUACCUUAGGAUUUAAGU
(((((..(((..((.((((((..(((((..((....)).....)))))......)))))))))))..))))).. ( -12.50, z-score =  -0.70, R)
>consensus
UUAAUAAUCAAUUGAGUACAACAACUA_UGGCUAUAGUAAUAUGUACUAACGUGCUGUACUCAAGAAUUCAUU_
...........(((((((((...((((.......)))).....((((....))))))))))))).......... ( -7.98 = -10.10 +   2.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 21,197,751 – 21,197,823
Length 72
Sequences 3
Columns 74
Reading direction reverse
Mean pairwise identity 78.73
Shannon entropy 0.29443
G+C content 0.27851
Mean single sequence MFE -16.00
Consensus MFE -9.44
Energy contribution -11.00
Covariance contribution 1.56
Combinations/Pair 1.11
Mean z-score -2.46
Structure conservation index 0.59
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.04
SVM RNA-class probability 0.879192
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21197751 72 - 24543557
-AAUGAAUUCUUGAGUACAGCACGUUAGUACAUAUUACUAUAGCUA-UAGUUGUUGUACUCAAUUGAUUAUUAA
-(((((.(..((((((((((((.((....)).....(((((....)-))))))))))))))))..).))))).. ( -18.10, z-score =  -2.70, R)
>droSec1.super_11 1151266 73 - 2888827
-AAUGAAUUCUUGAGUACAGCACGUUAGUACAUAUUACUAUAACCAUUAGUUGUUGUACUCAAUUGAUUAUUAA
-(((((.(..(((((((((((....(((((.....))))).(((.....))))))))))))))..).))))).. ( -17.40, z-score =  -3.04, R)
>droYak2.chr3L 4869543 74 + 24197627
ACUUAAAUCCUAAGGUACAAAAUUUUACUACAUAUUACAUUAGCCAGUAGUUGUUGUACGCCAUUAGUUUUUAA
...((((..((((.((((((....(((((...((......))...)))))...))))))....))))..)))). ( -12.50, z-score =  -1.65, R)
>consensus
_AAUGAAUUCUUGAGUACAGCACGUUAGUACAUAUUACUAUAGCCA_UAGUUGUUGUACUCAAUUGAUUAUUAA
..........((((((((((((...((((...(((....)))...))))..))))))))))))........... ( -9.44 = -11.00 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:48 2011