| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,180,192 – 21,180,329 |
| Length | 137 |
| Max. P | 0.582548 |
| Location | 21,180,192 – 21,180,329 |
|---|---|
| Length | 137 |
| Sequences | 7 |
| Columns | 150 |
| Reading direction | reverse |
| Mean pairwise identity | 65.54 |
| Shannon entropy | 0.67502 |
| G+C content | 0.47425 |
| Mean single sequence MFE | -35.19 |
| Consensus MFE | -11.09 |
| Energy contribution | -13.01 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.582548 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21180192 137 - 24543557 ------------GUGUACUAAUCAAGGGAGGAACCAACGACACCCUGAAACAAGAAUAGAAACAGCUCCCUGGUGCAAUAGCCA-GGGUUCAAAUUAGACUUCAACCUCAACCUCCGAUUUUAGCCACCAUAUGGAGGCGAAAAUCAAUG ------------..............(((((.............((......))..........(..(((((((......))))-)))..)....................)))))((((((.(((.((....)).))).)))))).... ( -35.80, z-score = -2.09, R) >droSim1.chr3L 20536607 149 - 22553184 GUGUACUAAUCAAGGGAGGAACCAGCGACACCCUCAAACAAGACGAGGAACAGGAAUAGGAACAGCUCCCUGGUGCAAUAGCCA-GGGUUCAAAUUCGACUUCAACCCCAACCUCCGAUUUUAGCCACCAUAUGGAGGCGAAAAUCAAUG ..............(((((............((((.........)))).....((((..(((.....(((((((......))))-))))))..))))..............)))))((((((.(((.((....)).))).)))))).... ( -42.90, z-score = -2.16, R) >droSec1.super_11 1133553 149 - 2888827 GUGCACUAAUCAAGGGAGGAACCAGCGACACCCUCAAACAAGACGAGGAACUGGAAUAGGAACAGCUCCCUGGUGCAAUAGCCA-GGGUUCAAAUUCGACUUCAACCCCAACCUCCGAUUUUAGCCACCAUAUGGAGGCGAAAAUCAAUG ..............(((((..((((......((((.........))))..))))....((....(..(((((((......))))-)))..)......(....)....))..)))))((((((.(((.((....)).))).)))))).... ( -44.50, z-score = -2.39, R) >droYak2.chr3L 4849111 149 + 24197627 GUGUACUAAUCAAGGGAGGAACCAGCGACACCCUGAAAUAAUACGAGGAACAGGAAUAGGAACAGCUCCCUAGUGCAAUAGCCA-GGGUUCAAAUUCGACUUCAGCCUCAACGUCCGAUUUUAGCCACCAUAUGGAGGCAAAAAUCAAUG ((((.....(((.(((.(..........).))))))....))))((((.....(((..(((......((((.(.((....))))-)))......)))...)))..)))).......((((((.(((.((....)).))).)))))).... ( -35.40, z-score = -0.57, R) >droEre2.scaffold_4784 20864823 149 - 25762168 GUGUAUUAAUCAAGGGAGGAACCAGUGACACCCUGAAACAAGACGAGAAACAGGAAUAGGAACAGCUCCCUGGUGCAAUAGCCA-GGGUUCAAAUUUGACUUCAUUCUCAACCUCCGAUUUCAGCCACCAUAUGGAGGCAAAAAUCAAUG ..............(((((...(((.(....)))).........(((((....(((..(((......(((((((......))))-)))......)))...))).)))))..)))))(((((..(((.((....)).)))..))))).... ( -41.00, z-score = -1.54, R) >droAna3.scaffold_13337 14774810 110 + 23293914 ----------------------------CGUAAUAAUCGACUGGGUGAAACAAGAA------CGACACCCCGGUGCAAUAGCCACCAGCUCGAAUUCAACUUCAACCUCAACC------UUUGGCCUCCGCGUCGAGGCAAAAAUCAAUG ----------------------------........(((((((((((.........------...))))).(((((....).)))))).))))....................------....(((((......)))))........... ( -23.80, z-score = -0.58, R) >droPer1.super_33 574425 109 - 967471 -----------------------------------GCACACUAUUAGAGAGACAGCUACACACUGGAACAUAGUGCAAUAGCCA-GGGCCCUAGCCCCUCCCCCAUACACAC-----AUAUUCGUACUCAUAUUAGGGCAAAAAUCAAUG -----------------------------------((...(((.((..(((((.((((..(((((.....)))))...))))..-((((....))))...............-----......)).))).)).))).))........... ( -22.90, z-score = -1.32, R) >consensus GUG_A_UAAUCAAGGGAGGAACCAGCGACACCCUCAAACAAGACGAGAAACAGGAAUAGGAACAGCUCCCUGGUGCAAUAGCCA_GGGUUCAAAUUCGACUUCAACCUCAACCUCCGAUUUUAGCCACCAUAUGGAGGCAAAAAUCAAUG ...................................................................(((((((......)))).)))............................((((((.(((.((....)).))).)))))).... (-11.09 = -13.01 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:43 2011