| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,984,003 – 5,984,118 |
| Length | 115 |
| Max. P | 0.666298 |
| Location | 5,984,003 – 5,984,118 |
|---|---|
| Length | 115 |
| Sequences | 15 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 80.61 |
| Shannon entropy | 0.45073 |
| G+C content | 0.55652 |
| Mean single sequence MFE | -35.97 |
| Consensus MFE | -18.25 |
| Energy contribution | -17.27 |
| Covariance contribution | -0.98 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5984003 115 + 23011544 UCCGUAGGAACUGGCAAGACUGCCACCUUCUCGAUUGCUAUCCUUCAGCAAAUCGACACGAGCAUUCGCGAGUGCCAGGCGCUGAUCCUGGCCCCCACUCGCGAGUUGGCCACGC ..(((.(((..(((((....)))))..)))(((((((((.......))).)))))).))).((((((((((((((((((.......))))))....))))))))))..))..... ( -42.20, z-score = -2.17, R) >apiMel3.GroupUn 12497445 115 + 399230636 UCAACAGGAACUGGCAAGACUGCUACAUUUUCAAUUUCUAUUUUACAACAAAUUGACACUACCAUUAAAGAGUGUCAAGCUUUGAUUCUAGCACCAACUCGUGAGCUUGCUCAAC ......((...(((((....)))))...........................((((((((..........))))))))(((........))).))......((((....)))).. ( -20.60, z-score = -0.56, R) >droPer1.super_1 9995051 112 - 10282868 ---UCAGGUACUGGCAAGACUGCCACCUUUUCGAUUGCCAUUCUUCAGCAAAUCGACACGGCCGUGCGCGAAUGCCAGGCUUUGAUCUUGGCCCCCACUCGUGAGUUGGCCACGC ---..((((...((((....))))))))..((((((((.........)).))))))...(((((..(((((.((...((((........))))..)).)))))...))))).... ( -36.20, z-score = -0.86, R) >dp4.chr4_group1 4985979 112 - 5278887 ---UCAGGUACUGGCAAGACUGCCACCUUUUCGAUUGCCAUUCUUCAGCAAAUCGACACGGCCGUGCGCGAAUGCCAGGCUUUGAUCUUGGCCCCCACUCGUGAGUUGGCCACGC ---..((((...((((....))))))))..((((((((.........)).))))))...(((((..(((((.((...((((........))))..)).)))))...))))).... ( -36.20, z-score = -0.86, R) >droAna3.scaffold_12916 11398749 115 + 16180835 UUCACAGGAACUGGCAAGACUGCCACCUUCUCGAUCGCCAUCCUUCAGCAGAUCGACACGUCCAUUCGCGAGUGCCAGGCUCUGAUCCUGGCCCCAACUCGCGAGCUGGCCACGC ......(((..(((((....)))))..)))((((((((.........)).))))))..(((((((((((((((((((((.......))))))....))))))))).)))..))). ( -42.90, z-score = -2.69, R) >droYak2.chr2L 9114205 115 - 22324452 UCCAUAGGAACUGGCAAGACUGCCACCUUCUCGAUUGCUAUCCUUCAGCAAAUCGACACGUCCAUCCGCGAGUGCCAGGCGCUGAUCCUGGCCCCCACUCGCGAGUUGGCCACGC ......(((..(((((....)))))..)))(((((((((.......))).))))))..((((((.((((((((((((((.......))))))....))))))).).)))..))). ( -40.90, z-score = -2.57, R) >droEre2.scaffold_4929 6074621 115 + 26641161 UCCGUAGGAACUGGCAAGACUGCCACCUUCUCGAUUGCUAUCCUUCAGCAAAUCGACACGUCCAUUCGCGAGUGCCAGGCGCUGAUCCUGGCCCCAACUCGCGAGUUGGCCACGC ..(((.(((..(((((....)))))..)))(((((((((.......))).))))))...(((.((((((((((((((((.......))))))....)))))))))).))).))). ( -44.00, z-score = -3.14, R) >droSec1.super_5 4055057 115 + 5866729 UCCCUAGGAACUGGCAAGACUGCCACCUUCUCGAUUGCUAUCCUUCAGCAAAUCGACACGUCCAUUCGCGAGUGCCAGGCGCUGAUCCUGGCCCCCACUCGCGAGUUGGCCACGC ......(((..(((((....)))))..)))(((((((((.......))).))))))...(((.((((((((((((((((.......))))))....)))))))))).)))..... ( -43.20, z-score = -3.27, R) >droSim1.chr2L 5772425 115 + 22036055 UCCGUAGGAACUGGCAAGACUGCCACCUUCUCGAUUGCUAUCCUUCAGCAAAUCGACACGUCCAUUCGCGAGUGCCAGGCGCUGAUCCUGGCCCCCACUCGCGAGUUGGCCACGC ..(((.(((..(((((....)))))..)))(((((((((.......))).))))))...(((.((((((((((((((((.......))))))....)))))))))).))).))). ( -44.00, z-score = -3.10, R) >droWil1.scaffold_180708 4580140 115 - 12563649 UUAACAGGUACUGGCAAAACUGCCACCUUCUCGAUUGCCAUUCUGCAGCAAAUCGACACGACAAGUCGCGAAUGUCAGGCUCUGAUUUUGGCACCAACUCGUGAAUUGGCCACCC ......(((..(((((....))))).....((((((((.........)).))))))(((((...((.((.((.(((((...))))).)).))))....))))).....))).... ( -28.50, z-score = -0.41, R) >droVir3.scaffold_12963 3275123 115 + 20206255 UUUGUAGGUACUGGCAAGACUGCCACCUUCUCGAUUGCCAUCCUUCAGCAAAUCGACACGUCCAUGCGCGAAUGUCAGGCUUUGAUCCUGGCACCAACUCGCGAAUUGGCCACCC ......(((..(((((....))))).....((((((((.........)).))))))...(.(((..(((((.(((((((.......))))))).....)))))...))).)))). ( -32.70, z-score = -1.06, R) >droMoj3.scaffold_6500 13638748 115 + 32352404 CUUGUAGGUACUGGCAAGACUGCCACCUUCUCGAUUGCCAUACUUCAGCAAAUCGACACGUCCAUUCGCGAAUGCCAAGCUUUGAUCUUGGCACCCACUCGCGAGUUGGCCACCC ......(((..(((((....))))).....((((((((.........)).))))))...(((.((((((((.(((((((.......))))))).....)))))))).))).))). ( -35.60, z-score = -2.58, R) >droGri2.scaffold_15252 2856791 113 + 17193109 --UUUAGGUACUGGCAAAACUGCCACCUUUUCGAUUGCCAUCCUUCAGCAAAUCGAUACGGCCGUUCGUGAAUGCCAGGCUCUGAUCUUGGCCCCCACUCGCGAGUUGGCUACCC --....(((((..((...((.(((......((((((((.........)).))))))...))).))((((((.((...((((........))))..)).))))))))..).)))). ( -32.40, z-score = -1.06, R) >triCas2.ChLG5 5389101 109 + 18847211 ------GGGACCGGCAAAACCGCCACCUUUUCGAUAUCAAUUCUUCAGCAGAUAGACACUUCGCUUAGAGAAUGCCAAGCUUUGAUUUUGGCUCCAACGCGAGAAUUAGCACAAC ------((....(((......)))...............((((((.(((.((........)))))..)))))).))..(((..((((((.((......)).)))))))))..... ( -22.20, z-score = -0.43, R) >anoGam1.chr2R 32384489 106 + 62725911 ---------ACGGGUAAGACGGCCACCUUCUCGAUAUCCAUUCUGCAGUCGAUGGACACGACGCUGCGAGAGACGCAGGUCCUCUGCCUGUCCCCGACGCGCGAGUUGGCCGUGC ---------.........(((((((....(((((.......)).((.((((..(((((.(((.(((((.....)))))))).......))))).))))..))))).))))))).. ( -37.90, z-score = -0.00, R) >consensus UCCGUAGGAACUGGCAAGACUGCCACCUUCUCGAUUGCCAUCCUUCAGCAAAUCGACACGUCCAUUCGCGAGUGCCAGGCUCUGAUCCUGGCCCCCACUCGCGAGUUGGCCACGC ......((....((((....)))).((..((((.......................(.((......)).)...((((((.......)))))).........))))..)))).... (-18.25 = -17.27 + -0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:12 2011