| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,175,875 – 21,175,976 |
| Length | 101 |
| Max. P | 0.724891 |
| Location | 21,175,875 – 21,175,976 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 76.63 |
| Shannon entropy | 0.43264 |
| G+C content | 0.39280 |
| Mean single sequence MFE | -21.36 |
| Consensus MFE | -14.29 |
| Energy contribution | -14.27 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.724891 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21175875 101 + 24543557 UGUGUAACUGCUCGAUGCAUAUAUUCAGCAGAUGCAAAUGCGGCCCGAAAGAAAGUCAAGGGCCAUCGCCCAUCUAAUGUGAGCAGAA-AAACUAUUUAUAC ..((((.(((((.((((....)))).))))).))))..((((((((.............))))).((((.........)))))))...-............. ( -26.32, z-score = -1.70, R) >droVir3.scaffold_13049 20411651 90 + 25233164 UGUGUAAUUGUUUAUUAU-UAAAACACGCAGAGAAAG--------UAAACCACAACAAAAAACAAUUGUAC---CGACAGGCACAGAACAAACUAUUUAUAC .((((((..((((.....-.................(--------(........)).........((((.(---(....)).))))...))))...)))))) ( -8.40, z-score = 0.63, R) >droSim1.chr3L 20532252 101 + 22553184 UGUGUAACUGCUCGAUGCAUAUAUUCAGCAGAUGCAAAUGCGGCCCGAAAGAAAGUCAAGGGCCAUUGCCCAUCUAAUGUGAGCAGAA-AAACUAUUUAUAC .......((((((...((((.......((((..((....))(((((.............))))).)))).......))))))))))..-............. ( -26.26, z-score = -1.66, R) >droSec1.super_11 1129200 100 + 2888827 UGUGUAACUGCUCGAUGCAUAUAUUCAGCAUAUGCAAAUGCGGCC-GAAAGAAAGUCAAGGGCCAUUGCCCAUCUAAUGUGAGCAGAA-AAACUAUUUAUAC .......((((((..(((((((.......)))))))...((((((-....)...)))..((((....)))).......))))))))..-............. ( -26.40, z-score = -1.82, R) >droYak2.chr3L_random 4066945 96 + 4797643 UGUGUAACUGUUCGAUGCAUAUAUAAAGCAGAUGCAGAUGCA-----AACGAAAGUCAAGGGCCAUCGCCCUUCUAAUGUGAGCAAAA-AAACUAUUUAUAC .((((((((((....(((.........)))...)))).(((.-----.((....)).((((((....)))))).........)))...-.......)))))) ( -22.30, z-score = -1.74, R) >droEre2.scaffold_4784 20860409 90 + 25762168 UGUGUAACUAUUCGAUGCAUAUAUAAAGCAGAUGCA-----------AACGAAAGUCAAGGGCCAUCGCCCUUCUAGUGUGAGCAGAA-AAACUAUUUAUAC .((((((.((.....(((.(((((...((....)).-----------.((....)).((((((....))))))...))))).)))...-....)).)))))) ( -18.50, z-score = -1.02, R) >consensus UGUGUAACUGCUCGAUGCAUAUAUUAAGCAGAUGCAAAUGCG____GAAAGAAAGUCAAGGGCCAUCGCCCAUCUAAUGUGAGCAGAA_AAACUAUUUAUAC .((((((((((((..(((((...........))))).......................((((....)))).........))))))..........)))))) (-14.29 = -14.27 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:42 2011