Locus 8227

Sequence ID dm3.chr3L
Location 21,124,292 – 21,124,376
Length 84
Max. P 0.811650
window11307

overview

Window 7

Location 21,124,292 – 21,124,376
Length 84
Sequences 7
Columns 85
Reading direction forward
Mean pairwise identity 68.70
Shannon entropy 0.63926
G+C content 0.46541
Mean single sequence MFE -18.47
Consensus MFE -7.16
Energy contribution -7.11
Covariance contribution -0.05
Combinations/Pair 1.89
Mean z-score -1.53
Structure conservation index 0.39
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.77
SVM RNA-class probability 0.811650
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21124292 84 + 24543557
CAC-UUUUCCCACAUAGCAUUUCCUCUGUCAGGUUUGUUGGACGCCAACAGUUCGCUUCGAACUUGUUGUGCCCGCAUUAUUUUA
...-..........(((((...(((.....)))..)))))...((((((((((((...))))).))))).))............. ( -16.90, z-score =  -1.26, R)
>droAna3.scaffold_13337 14722947 85 - 23293914
UACAUUUCCUACCGGUUUGUAAGCUUUGGUGUGACCAAAAGUUCAGGUCAUUUCUAUUGUUGACGGUAUAUUUGGAUUUAUUUAA
......((((((((.......(((..(((.((((((.........))))))..)))..)))..))))).....)))......... ( -17.90, z-score =  -1.03, R)
>droEre2.scaffold_4784 20813580 84 + 25762168
CAC-UUUUCCCACACAGCAUUUCCUCUGCCAGCUUCGUUUGACGCAGACAGUUCGCUUCGAACUUGUUGUGCCCGCAUUAUUUUA
...-........(((((((.....(((((...(.......)..))))).((((((...))))))))))))).............. ( -17.40, z-score =  -2.08, R)
>droYak2.chr3L 4798368 84 - 24197627
CAC-UUUUCCCACACAGCAUUUCCUCUGCCAGCUUUGUUUGACGCCGACGGUUCGCAUCGAACUUGUUGUGCCCGCAUUAUUUUA
...-........(((((((.(((...(((.(((((((........))).)))).)))..)))..))))))).............. ( -14.50, z-score =  -0.41, R)
>droSec1.super_11 1082030 84 + 2888827
CAC-UUUUCCCACACAGCAUUUCCUCUGUCAGCUUCGUUUGACGCCGACAGUUCGCUUCGAACUUGUUGUGCCCGCAUUAUUUUA
...-........(((((((.......((((.((.((....)).)).))))(((((...))))).))))))).............. ( -18.70, z-score =  -2.78, R)
>droSim1.chr3L 20479634 84 + 22553184
CAC-UUUUCCCACACAGCAUUUCCUCUGUCAGCUUCGUUUGACGCCGACAGUUCGCUUCGAACUUGUUGUGCCCGCAUUAUUUUA
...-........(((((((.......((((.((.((....)).)).))))(((((...))))).))))))).............. ( -18.70, z-score =  -2.78, R)
>droGri2.scaffold_15110 12420832 84 - 24565398
CAC-UUUUCUGCCUUGUCACUGCCGGUGGCAAGUUCGCCAGUUGCCUCCAGUUGAAUCUGGUGCGGUUGCGGUUGCUGUACUUCA
...-......((((((((((.....)))))))).((((.((..((..((((......)))).))..))))))..))......... ( -25.20, z-score =  -0.33, R)
>consensus
CAC_UUUUCCCACACAGCAUUUCCUCUGUCAGCUUCGUUUGACGCCGACAGUUCGCUUCGAACUUGUUGUGCCCGCAUUAUUUUA
............((((((........((((.((.((....)).)).))))(((((...)))))..)))))).............. ( -7.16 =  -7.11 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:41 2011