Locus 8226

Sequence ID dm3.chr3L
Location 21,119,944 – 21,120,057
Length 113
Max. P 0.718583
window11306

overview

Window 6

Location 21,119,944 – 21,120,057
Length 113
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 85.81
Shannon entropy 0.27449
G+C content 0.51661
Mean single sequence MFE -34.00
Consensus MFE -25.18
Energy contribution -27.68
Covariance contribution 2.50
Combinations/Pair 1.06
Mean z-score -1.71
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.50
SVM RNA-class probability 0.718583
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 21119944 113 + 24543557
UGACAGGUUGGGUUAACUGAGUGCAGAGCCGAGAACCGGCGACAACUCGGACGACUCAAUAAACUAGCUUUU-GUUGGCUUAUUGACAGCGGGACGGCAGGACAGCCGCACAUU
......((((.(((..((((((.....((((.....))))....))))))..)))(((((((.(((((....-))))).))))))))))).(..((((......))))..)... ( -38.50, z-score =  -2.73, R)
>droAna3.scaffold_13337 14719367 89 - 23293914
-----UGACAGGUUAACAGA----AAAGCC---AACAGGCGAC------GACAACUCAAUAAACUAGCUUUUUGU-GGCUUAUUGACAG--GCACA----GUCCGGCUCACAUU
-----.....((((......----...(((---....)))...------((....))....))))((((..((((-(.((.......))--.))))----)...))))...... ( -14.90, z-score =   0.74, R)
>droEre2.scaffold_4784 20809270 113 + 25762168
UGACAGGUUGGGUUAACUGAGUGCAGAGCCCAGAACCGGCGUCAACUCGGACGACUCAAUAAACUAGCUCUUUGUUGGCUUAUUGACAGCGGGGCG-CAGGACAGUCGCACAUU
.(((..((((((((..((((((.....(((.......)))....))))))..))))))))...((.((.((((((((.........)))))))).)-).))...)))....... ( -35.80, z-score =  -0.86, R)
>droYak2.chr3L 4794299 114 - 24197627
UGACAGGUUGGGCUAACUGAGUGCAGAGCCGAGAACCGGCGUCAACUUGGACGACUCAAUAAACUAGCUUUUUGUUGGCUUAUUGACAGCGGGACGGCAGGACAGCCGCACAUU
...((((((((.....(((....))).((((.....)))).))))))))..((..(((((((.(((((.....))))).)))))))...))(..((((......))))..)... ( -37.80, z-score =  -1.96, R)
>droSec1.super_11 1077641 113 + 2888827
UGACAGGUUGGGUUAACUGAGUGCAGAGCCGAGAACCGGCGACAACUCGGACGACUCAAUAAACUAGCUUUU-GUUGGCUUAUUGACAGCGGGACGGCAGGACAGCCGCACAUU
......((((.(((..((((((.....((((.....))))....))))))..)))(((((((.(((((....-))))).))))))))))).(..((((......))))..)... ( -38.50, z-score =  -2.73, R)
>droSim1.chr3L 20475270 113 + 22553184
UGACAGGUUGGGUUAACUGAGUGCAGAGCCGAGAACCGGCGACAACUCGGACGACUCAAUAAACUAGCUUUU-GUUGGCUUAUUGACAGCGGGACGGCAGGACAGCCGCACAUU
......((((.(((..((((((.....((((.....))))....))))))..)))(((((((.(((((....-))))).))))))))))).(..((((......))))..)... ( -38.50, z-score =  -2.73, R)
>consensus
UGACAGGUUGGGUUAACUGAGUGCAGAGCCGAGAACCGGCGACAACUCGGACGACUCAAUAAACUAGCUUUU_GUUGGCUUAUUGACAGCGGGACGGCAGGACAGCCGCACAUU
......((((.(((..((((((.....((((.....))))....))))))..)))(((((((.(((((.....))))).))))))))))).(..((((......))))..)... (-25.18 = -27.68 +   2.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:40 2011