| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,118,965 – 21,119,089 |
| Length | 124 |
| Max. P | 0.780990 |
| Location | 21,118,965 – 21,119,089 |
|---|---|
| Length | 124 |
| Sequences | 5 |
| Columns | 124 |
| Reading direction | reverse |
| Mean pairwise identity | 93.47 |
| Shannon entropy | 0.11605 |
| G+C content | 0.49098 |
| Mean single sequence MFE | -35.98 |
| Consensus MFE | -30.88 |
| Energy contribution | -30.92 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780990 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21118965 124 - 24543557 AAUACCACUUUAAAGUACCAGCCUCGAAAUCAGGUGCGCUUUUAGAAGCCUCCUACAUGGAAGUUUCCAACUCGAGCUGCGCCUGAUCGACUGACCCACAAAAAGCCUUUGGGCGGUGCACGGG ..............(((((.(((((((..((((((((((((((.(((((.(((.....))).))))).))...)))).))))))))))))........((((.....))))))))))))..... ( -42.50, z-score = -3.01, R) >droSim1.chr3L 20474307 124 - 22553184 AAUACCACUUAAAAGUACCAGCCUCGAAUUCAGAUGCGCUUUUAGAAGCCUCCUACAUGGAAGUUUCCAACUCGAGUUGCGCCUGAUCGACUGACCCACAAAAAGCCUUUGGGCGGUGCAAGGG ....((.(((....(((((.(((((((..((((..((((.....(((((.(((.....))).))))).(((....)))))))))))))))........((((.....))))))))))))))))) ( -34.90, z-score = -1.45, R) >droSec1.super_11 1076692 124 - 2888827 AAUACCACUUAAAAGUACCAGCCUCAAAUUCAGAUGCGCUUUUAGAAGCCUCCUACGUGGAAGUUUCCAACUCGAGUUGCGCCUGAUCGACUGACCCACAAAAAGCCUUUGGGCGGUGCAAGGG ....((.(((....(((((.((((((...((((..((((.....(((((.(((.....))).))))).(((....))))))))))).....)))....((((.....))))))))))))))))) ( -32.00, z-score = -0.48, R) >droYak2.chr3L 4793126 123 + 24197627 -AUACCACUUAAAAAUACCAGCCUCGAAUUCAGAUGCGCUUUUAGAAGCCUCCUACAUGGAAGUUUCCAACUCGAGUUGCGCCUGAUCGACUGACCCACAAAAAGCCUUUGGGCGGUGCAAAGA -.((((............(((..((((..((((..((((.....(((((.(((.....))).))))).(((....))))))))))))))))))...........(((....)))))))...... ( -32.40, z-score = -1.82, R) >droEre2.scaffold_4784 20807924 120 - 25762168 AAUACCACUUAAAAA---CAGCCUCGAAUUCAGAUGCGCUUUUAGAAGCCUCCUACAUGGAAGUUUCCAACUCGAGUUGCGCCUGAUCGACUGACCCAC-AAAAGCCUUUGGGCGGUGGGGAAA ...............---(((..((((..((((..((((.....(((((.(((.....))).))))).(((....)))))))))))))))))).(((((-....(((....))).))))).... ( -38.10, z-score = -2.55, R) >consensus AAUACCACUUAAAAGUACCAGCCUCGAAUUCAGAUGCGCUUUUAGAAGCCUCCUACAUGGAAGUUUCCAACUCGAGUUGCGCCUGAUCGACUGACCCACAAAAAGCCUUUGGGCGGUGCAAGGG ..((((............(((..((((..((((.(((((((((.(((((.(((.....))).))))).))...)))).))).)))))))))))...........(((....)))))))...... (-30.88 = -30.92 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:39 2011