| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,101,252 – 21,101,348 |
| Length | 96 |
| Max. P | 0.652071 |
| Location | 21,101,252 – 21,101,348 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 85.53 |
| Shannon entropy | 0.27544 |
| G+C content | 0.40201 |
| Mean single sequence MFE | -21.19 |
| Consensus MFE | -16.98 |
| Energy contribution | -18.07 |
| Covariance contribution | 1.09 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21101252 96 - 24543557 GCGUUUUCCAUGUGAUUGUCACGCUUGAAGGACUUUUCUCGUGGAAAGCGCCAGCAACAAAAACCCAAGCAAAAAUCAAAACAACAAAGGCGAAAA ((((((((((((.((..(((.(.......))))...)).))))))))))))..((.............)).......................... ( -23.62, z-score = -1.48, R) >droSim1.chr3L 20456821 96 - 22553184 GCGUUUUCCAUGUGAUUGUCACGCUUGAAGGACUUUUCUCGUGGAAAGCGCCAACAAUAAAAACCCAAGCAGAAAUCAAAACAACAAAGGCGAAAA ((((((((((((.((..(((.(.......))))...)).))))))))))))............................................. ( -23.60, z-score = -1.82, R) >droSec1.super_11 1059237 96 - 2888827 GCGUUUUCCAUGUGAUUGUCACGCUUGAAGGACUUUUCUCGUGGAAAGCGCCAACAAUAAAAACCCAAGCAGAAAUCAAAACAACAAAGGCGAAAA ((((((((((((.((..(((.(.......))))...)).))))))))))))............................................. ( -23.60, z-score = -1.82, R) >droYak2.chr3L 4774591 92 + 24197627 GCGUUUUCCAUGUGAUUGCCACGCUUGAAGGACUUUUCUCGUGGAAAGCGC---CAAC-AAAACCUAAGCAAAAAUCAAAACAACAAAGGCGAAAA ((((((((((((.((..(((.........)).)...)).))))))))))))---....-..................................... ( -21.20, z-score = -1.17, R) >droEre2.scaffold_4784 20789991 93 - 25762168 GCGUUUUCCAUGUGAUUGCCACGCUUGAAGGACUUUUCUCGUGGAAAGCGC---CAACAAAAACUUAAGCAAAAAUCAAAACAACAAAGGCGAAAA ((((((((((((.((..(((.........)).)...)).))))))))))))---.......................................... ( -21.20, z-score = -1.11, R) >droWil1.scaffold_181017 76591 94 - 939937 --CUAUUCCAUGUGAUUGUCACGCUUGAAGGACUUUUUUCGACAGAGAAACAAAAUACAAAAAACUCUGAAAGAAAACGAAAAAUAAAAGCGAAAA --...(((...(((.....)))((((.........(((((..(((((.................)))))...)))))..........))))))).. ( -13.94, z-score = -0.94, R) >consensus GCGUUUUCCAUGUGAUUGUCACGCUUGAAGGACUUUUCUCGUGGAAAGCGCCAACAACAAAAACCCAAGCAAAAAUCAAAACAACAAAGGCGAAAA ((((((((((((.((..(((.(.......))))...)).))))))))))))............................................. (-16.98 = -18.07 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:37 2011