| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,090,131 – 21,090,240 |
| Length | 109 |
| Max. P | 0.570282 |
| Location | 21,090,131 – 21,090,240 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.87 |
| Shannon entropy | 0.25193 |
| G+C content | 0.44695 |
| Mean single sequence MFE | -32.47 |
| Consensus MFE | -23.20 |
| Energy contribution | -25.40 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21090131 109 - 24543557 AGAUUGAGGUGCCGGCGCUUCGCGUUGAGGAAGGGAGAUAUAUUCG--UAUAUACACUCAUAUAUGUAUGUACAUAUAUGCAUUCCCUAAGGCGGGUCUUCUGCACAACCA .....((((((....))))))(.((((....((((((.(((((..(--((((((((........)))))))))..)))))..))))))...((((.....)))).))))). ( -34.10, z-score = -1.68, R) >droEre2.scaffold_4784 20778351 93 - 25762168 AGAUUGAGGUGCCGGCGCUUCGAAUUGAGGAAGGGAGUUAUA------UAUACAUACAUAUAUAUGUAU------------ACUCCCUAAGGCGGGUCUUCUGCACAAUCG .((((((((.(((.((.((((.....)))).(((((((((((------((((........)))))))).------------)))))))...)).)))..)))...))))). ( -31.10, z-score = -2.97, R) >droSec1.super_11 1047949 111 - 2888827 AGAUUGAGGUGCCGGCGCUUCGCAUUGAGGAAGGGAGAUAUAUUCGUAUAUAUACGCUCAUAUAUGUAUGUAUGUAUAUGCAUUCCCUAAGGCGGGUCUUCUGCACAACCG .((((((((((....))))))).)))..((.((((((((((((.((((((((((......))))))))))...))))))...))))))...((((.....))))....)). ( -32.20, z-score = -0.60, R) >consensus AGAUUGAGGUGCCGGCGCUUCGCAUUGAGGAAGGGAGAUAUAUUCG__UAUAUACACUCAUAUAUGUAUGUA__UAUAUGCAUUCCCUAAGGCGGGUCUUCUGCACAACCG .(...((((.(((.((.((((.....)))).((((((..((((.((((((((((..........)))))))))).))))...))))))...)).)))))))..)....... (-23.20 = -25.40 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:36 2011