| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,071,656 – 21,071,757 |
| Length | 101 |
| Max. P | 0.537939 |
| Location | 21,071,656 – 21,071,757 |
|---|---|
| Length | 101 |
| Sequences | 13 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 78.09 |
| Shannon entropy | 0.46572 |
| G+C content | 0.54280 |
| Mean single sequence MFE | -31.46 |
| Consensus MFE | -17.63 |
| Energy contribution | -16.64 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537939 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 21071656 101 + 24543557 UCCAAGCUGCGAGGCGUCGGAAACGAUGCACUGCGUCGCUUCGCCGCCCUUGGAUAGAUGAUCUUGUCAUUGGGAUUGCCUGUAAGUAAUUUAUUGAUCGA ((((((..(((((((((((....)))))).))(((......)))))).))))))...........((((...(((((((......)))))))..))))... ( -33.70, z-score = -1.48, R) >droGri2.scaffold_15110 4890062 89 - 24565398 UCCAAGCUGCGUGGCGUCGGAAAUGAUGCACUGCGUCGCUUGGCCGCACGCGGAUAAAUGAUCUUGUCAUUGGGAUUACCUGUACACAA------------ .((((((.((((.((((((....))))))...)))).))))))(((....)))(((..(((((((......)))))))..)))......------------ ( -29.70, z-score = -1.04, R) >droMoj3.scaffold_6680 21591563 89 + 24764193 UCCAAGCUGCGCGGCGUCGGAAAUGAUGCACUGCGUCGCUUGGCCGCACGCGGAUAUAUAAUCUUAUCAUUUGGAUUACCUGUUUAGAA------------ .((((((.((((.((((((....))))))...)))).))))))(((....))).....((((((........))))))...........------------ ( -30.30, z-score = -1.75, R) >droVir3.scaffold_13049 9962877 93 - 25233164 UCCAAGCUGCGCGGCGUCGGAAAUGAGGCACUGCGUCGCUUGGCCGCACGCGGAUAGAUGAUCUUGUCAUUGGGAUUUCCUGCGCAUUAAAGG-------- .((((((.((((((.(((........))).)))))).))))))......(((....((((((...))))))(((....))).)))........-------- ( -33.60, z-score = -0.64, R) >droWil1.scaffold_181017 39130 94 + 939937 UCCAAACUGCGCGGCGUCGGAAAUGAGGCGCUACGUCGCUUGGCCGCGCGUGGAUAAAUAAUUUUGUCAUUGGGAUUGCCUACAAAAGAAACAA------- (((((...((((((((((........)))((......))...)))))))...((((((....)))))).)))))....................------- ( -28.50, z-score = -0.58, R) >droPer1.super_2749 4860 82 - 5139 UCCAAGCUGCGUGGCGUCGGAAACGAGGCGCUGCGUCGCUUGGCCGCCCUUGGGUAAAUGAUCUUGUCGUUGGGGUUGCCUG------------------- ...((((.(((..((((((....))..))))..))).))))(((.(((((..(..((......))..)...))))).)))..------------------- ( -36.20, z-score = -2.13, R) >dp4.chrXR_group8 3857595 82 + 9212921 UCCAAGCUGCGUGGCGUCGGAAACGAGGCGCUGCGUCGCUUGGCCGCCCUUGGGUAAAUGAUCUUGUCGUUGGGGUUGCCUG------------------- ...((((.(((..((((((....))..))))..))).))))(((.(((((..(..((......))..)...))))).)))..------------------- ( -36.20, z-score = -2.13, R) >droAna3.scaffold_13337 14668775 89 - 23293914 UCCAAGCUGCGUGGCGUCGGAAAUGAUGCACUACGUCGCUUGGCCGCCCUUGGAUAGAUGAUCUUGUCAUUGGGAUUGCCUAUUAAUCA------------ .((((((.(((((((((((....)))))).).)))).)))))).........(((((..((((((......))))))..))))).....------------ ( -30.20, z-score = -1.70, R) >droEre2.scaffold_4784 20759041 89 + 25762168 UCCAAGCUGCGCGGGGUCGGAAACGAUGCACUGCGUCGCUUCGCCGCCCUUGGAUAGAUGAUCUUGUCAUUGGGAUUGCCUGUAAGUUA------------ .(((((..(((((((((.(....)(((((...))))))))))).))).)))))((((..((((((......))))))..))))......------------ ( -31.30, z-score = -0.94, R) >droYak2.chr3L 4744374 89 - 24197627 UCCAAGCUGCGCGGGGUUGGAAACGAUGCACUGCGUCGCUUCGCCGCCCUUGGAUAGAUGAUCUUGUCAUUGGGAUUGCCUGUAAGUAA------------ .(((((..(((((((((.(....)(((((...))))))))))).))).)))))((((..((((((......))))))..))))......------------ ( -31.00, z-score = -1.12, R) >droSec1.super_11 960130 89 + 2888827 UCCAAGCUGCGCGGCGUCGGAAACGAUGCACUGCGUCGCUUCGCCGCCCUUGGAUAGAUGAUCUUGUCAUUGGGAUUGCCUGUAAGUAA------------ ...((((.((((.((((((....))))))...)))).)))).((..(((...(((((......)))))...)))...))..........------------ ( -32.90, z-score = -1.65, R) >droSim1.chr3L 20426468 89 + 22553184 UCCAAGCUGCGCGGCGUCGGAAACGAUGCACUGCGUCGCUUCGCCGCCCUUGGAUAGAUGAUCUUGUCAUUGGGAUUGCCUGUAAGUAA------------ ...((((.((((.((((((....))))))...)))).)))).((..(((...(((((......)))))...)))...))..........------------ ( -32.90, z-score = -1.65, R) >triCas2.ChLG5 3200744 81 + 18847211 UCCGGACUUCGUGGUACUGAUAAGGAGGAGGCCCUGUGUUUGGUACUUCUCGGGUAGAGAAUCUUAUCGCUCGAGUUCCCU-------------------- ...(((.((((.(((((..(...(.(((....))).)..)..))))(((((.....)))))........).)))).)))..-------------------- ( -22.50, z-score = 0.78, R) >consensus UCCAAGCUGCGCGGCGUCGGAAACGAUGCACUGCGUCGCUUGGCCGCCCUUGGAUAGAUGAUCUUGUCAUUGGGAUUGCCUGUAAAUAA____________ (((((((.((((((.((((....))..)).)))))).))))...........(((((......)))))....))).......................... (-17.63 = -16.64 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:34 2011