| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,059,178 – 21,059,306 |
| Length | 128 |
| Max. P | 0.788300 |
| Location | 21,059,178 – 21,059,306 |
|---|---|
| Length | 128 |
| Sequences | 6 |
| Columns | 148 |
| Reading direction | reverse |
| Mean pairwise identity | 77.18 |
| Shannon entropy | 0.39739 |
| G+C content | 0.52949 |
| Mean single sequence MFE | -41.53 |
| Consensus MFE | -23.52 |
| Energy contribution | -25.00 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788300 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21059178 128 - 24543557 -ACAUCAAUAUCAAAAG----CUUAUUAGGCACUCGAAUC---CCGGAUUCGUCGCCGGGUUU-------CUCCCCUCACUGGAUCCACGC-----GCGAUCGAUUGGCUUCCAAUUGAAAACGAUCCCUUUCGUUCGCCGAACCCUU -................----.......(((...((((((---...))))))..)))(((((.-------....((.....)).....((.-----((((((((((((...))))))))..((((......))))))))))))))).. ( -35.60, z-score = -1.88, R) >droSim1.chr3L 20413348 128 - 22553184 -ACAUCAAUAUCAAAAG----CUUAUUAGGCACUCGAAUC---CCGGAUUCGUCGCCGGACUU-------CUCUCCUCACUGGAUCCCCGC-----GCGUUCGAUUGGCUUCCAAUUGAAAACGAUCCCUCUCGUUCGGCGAGCCCUU -................----.......(((...((((((---...))))))(((((((((..-------...(((.....)))......(-----(..(((((((((...)))))))))..)).........))))))))))))... ( -38.60, z-score = -2.37, R) >droSec1.super_11 947731 128 - 2888827 -ACAUCAAUAUCAAAAG----CUUAUUAGGCACUCGAAUC---CCGGAUUCGUCGCCGGACUU-------CUCCCCUCACUGGAUCCCCGC-----GCGUUCGAUUGGCUUCCAAUUGAAAACGAUCCCUCUCGUUCGGCGAACCCUU -...............(----((.....)))...((((((---...))))))(((((((((..-------....((.....)).......(-----(..(((((((((...)))))))))..)).........)))))))))...... ( -34.80, z-score = -1.69, R) >droYak2.chr3L 4728571 128 + 24197627 -ACAUCAAUGUUAAAAG----CUUAUUAGGCACUCGAAUC---CCGGAUUCGUCGCCGGGCUU-------GUCCCCUCAGUGGAUUGUCGC-----GCGAUCGAUUGGCUUCCAAUUGAAAACGAUCCCUCUCGCUUGCCGAGCCCUU -................----.......(((...((((((---...))))))..)))((((((-------(...((.....))......((-----(.((..(((((..(((.....)))..)))))..)).)))....))))))).. ( -36.70, z-score = -0.74, R) >droEre2.scaffold_4784 20746625 128 - 25762168 -ACAUCAAUAUUAAAAG----CUUAUUAGGCACUCGAAUC---CAGAAUUCGCCGCCGGGCUU-------GUGCCCUCGGUGGAUCCUGGC-----GCGAUCGAUUGGCUUCCAAUUGAAACCGAUCCCUCUCGCUUGCCGAGCCCUU -...............(----(((..(((((..(((...(---(((.((((((((..((((..-------..)))).)))))))).)))).-----.)))..((((((.(((.....))).))))))......)))))..)))).... ( -45.70, z-score = -2.98, R) >droAna3.scaffold_13337 14656658 148 + 23293914 AAUCUCAAAAACAGAAAGACCAUUUUUAGGCAAUCGAAUCGAUUGGGGCAUCCUGCCGGACGUGCCACACGUCUCCCUGCUGGCCACUGGUCGGCACUGGUCGGUUGGCCUCCAGGUGGAAGAGCUGCCUGUCGGCUGGAGAGUCCUU ..((((.....(((...(((((.....(((((((((...)))))).(((.....)))(((((((...))))))).)))(((((((...)))))))..)))))..)))(((..((((..(.....)..))))..)))..))))...... ( -57.80, z-score = -1.36, R) >consensus _ACAUCAAUAUCAAAAG____CUUAUUAGGCACUCGAAUC___CCGGAUUCGUCGCCGGACUU_______CUCCCCUCACUGGAUCCUCGC_____GCGAUCGAUUGGCUUCCAAUUGAAAACGAUCCCUCUCGUUCGCCGAGCCCUU ............................(((...((((((......))))))..)))((((....................(((((..(((.....))).((((((((...))))))))....)))))...(((.....))))))).. (-23.52 = -25.00 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:31 2011