| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,058,918 – 21,059,029 |
| Length | 111 |
| Max. P | 0.641934 |
| Location | 21,058,918 – 21,059,029 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 84.80 |
| Shannon entropy | 0.27034 |
| G+C content | 0.27946 |
| Mean single sequence MFE | -19.62 |
| Consensus MFE | -14.02 |
| Energy contribution | -15.74 |
| Covariance contribution | 1.72 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641934 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21058918 111 - 24543557 UUUUUAAUUUUUCAGUCAAUGA-UGCCAGGUGACGGCCAAAAAUUUAUACAAAAUUUAGACAAAAAUAACUAAAACUUGACUGGAAAAUUACGGAUAAAAUGUUUUUGGUAG ((..(((((((((((((((...-.(((.(....)))).................(((((..........)))))..)))))))))))))))..))................. ( -23.20, z-score = -2.64, R) >droEre2.scaffold_4784 20746368 108 - 25762168 --AAUGCCAAUAAUGUCAAUAA-UGCCAGGUGACGGCCAAAACU-UAUACAAAAUUUAGACAAAAAUAACCAAAACUUGACUGGAAAAUUACAGAUAAAAUGAUUUUGGUAG --..((((((....((((....-.(((.(....)))).......-...................................(((........)))......)))).)))))). ( -17.50, z-score = -1.39, R) >droYak2.chr3L 4728315 107 + 24197627 -UUUUAGUUUUUCAGUCUAUGAGAGCCAGGUGACAGCCAAAAACUUGUUCAAAAUUUAGACAAAAAAAAAUAAAACUUGAUUGGAAAAUCACGGAUAAAAUAAUUAAG---- -..((((((.((..(((..(((...((((((....)))......(((((.........)))))..................)))....)))..)))..)).)))))).---- ( -15.60, z-score = -0.48, R) >droSec1.super_11 947473 109 - 2888827 --UUUAAUUUUUUAGUCAAUGA-UGCCAGGUGACGGCCAAAAAUUUAUACAAAAUUUAGACAAAAAUAACUAAAAUUUGACUGGAAAAUUACGGAUAAAAUGUUUUUGGUAG --..(((((((((((((((...-.(((.(....)))).................(((((..........)))))..)))))))))))))))..................... ( -20.70, z-score = -2.02, R) >droSim1.chr3L 20413090 109 - 22553184 --UUUAAUUUUUUAGUCAAUGA-UGCCAGGUGACGGCCAAAAAUGUAUACAAAAUUUAGACAAAAAUAACUAAAAUUUGACUGAAAAAUUACGGAUAAAAUGUUUUUGGUAG --..(((((((((((((((...-.(((.(....)))).................(((((..........)))))..)))))))))))))))..................... ( -21.10, z-score = -2.20, R) >consensus __UUUAAUUUUUCAGUCAAUGA_UGCCAGGUGACGGCCAAAAAUUUAUACAAAAUUUAGACAAAAAUAACUAAAACUUGACUGGAAAAUUACGGAUAAAAUGUUUUUGGUAG ....(((((((((((((((.....(((.(....)))).................(((((..........)))))..)))))))))))))))..................... (-14.02 = -15.74 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:30 2011