| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,942,980 – 5,943,100 |
| Length | 120 |
| Max. P | 0.554465 |
| Location | 5,942,980 – 5,943,100 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.32 |
| Shannon entropy | 0.41763 |
| G+C content | 0.38703 |
| Mean single sequence MFE | -26.62 |
| Consensus MFE | -15.58 |
| Energy contribution | -15.18 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554465 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5942980 120 - 23011544 GAUGUCGUAAAGGAGAAGCUUUAUGAGGCUAUCUCCAAAACUGGAUCUACGAUCAAAUCCGGAUCGGCAAGCUUACAGAGUCUUGAUGAUGCCGUGCGUAACGUUAUAAAAAUGAAAAAG (((((((((..((((((((((....))))).)))))......(((((..(((((.......))))).(((((((...))).))))..))).)).))))..)))))............... ( -29.80, z-score = -1.41, R) >droSim1.chr2L 5730328 111 - 22036055 GAUGUGGUACAGGAGAAGCUUUAUGAGGCUAUCUCCAAAACUGGAACUGCGAUCAAAUCCGGAUCGGCA---------AGUCUUGAUAAAGCCGUGAAUAACGUUAUAAAAAUGAAAAAG (((((..(((.((((((((((....))))).)))))....(.(((..(((((((.......)))).)))---------..))).)........)))....)))))............... ( -26.30, z-score = -1.70, R) >droSec1.super_5 4013675 111 - 5866729 GAUGUUGUACAGGAGAAGCUUUAUGAGGCUAUCUCCAAAACUGGAUCUGCGAUCAAAUCCGGAUCGGCA---------AGUCUUGAUAAAGCCGUAAAUAACGUUAUGAAAUUGAAAAAG ((((((((...((((((((((....))))).)))))....((((((.((....)).))))))..((((.---------............))))...))))))))............... ( -29.32, z-score = -2.52, R) >droYak2.chr2L 9070984 120 + 22324452 GAUGUGUUAAAGAAGAAGUAUUAUAACGCUGUCAGCAAUGCUGGAUCUACGAUCAAAUCCGCAUCGGUAACCUUAGAGAGCGUUAAAGAUGUCGUGGAUAACGUUUUUAAAAUGAAAAAG ...((((((...((......)).))))))..(((((...)))))(((((((.........(((((..(((((((...))).))))..))))))))))))..................... ( -22.90, z-score = -0.05, R) >droEre2.scaffold_4929 6028363 120 - 26641161 GAUGUGAUGAAGAAUAAGCUUUAUAAGUUUAUCUCCAAUGCUGGAUCUAUGAUCAAACAUGGAUCGUUAACCAUGCAGGGUCUUGAAGACGCUAUGACUAACAGUUUUAAAAUAAAAAAG ...(((.((.(((.((((((.....))))))))).)).)))..((((((((......))))))))((((..(((..((.(((.....))).)))))..)))).................. ( -24.80, z-score = -1.21, R) >consensus GAUGUGGUAAAGGAGAAGCUUUAUGAGGCUAUCUCCAAAACUGGAUCUACGAUCAAAUCCGGAUCGGCAA_C_U__AGAGUCUUGAUGAAGCCGUGAAUAACGUUAUAAAAAUGAAAAAG .................(((((((((((((...((((....))))....(((((.......)))))............)))))).)))))))(((.....)))................. (-15.58 = -15.18 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:09 2011