| Sequence ID | dm3.chr3L |
|---|---|
| Location | 21,033,604 – 21,033,700 |
| Length | 96 |
| Max. P | 0.661380 |
| Location | 21,033,604 – 21,033,700 |
|---|---|
| Length | 96 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 61.39 |
| Shannon entropy | 0.76632 |
| G+C content | 0.45612 |
| Mean single sequence MFE | -21.52 |
| Consensus MFE | -5.79 |
| Energy contribution | -7.03 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.661380 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 21033604 96 - 24543557 UUUAAGAUAAGUG-----AGUCAAAAGCACUAAAACCAGAG-CACAGAUAAGUGUGGAGUGG-AGUGCAGAUAGC--CAGAUGAAAGAUGUCGCCCUAGACAUUU-- .....(((.....-----.)))....(((((...(((...(-(((......)))).).))..-))))).......--........(((((((......)))))))-- ( -20.70, z-score = -2.10, R) >dp4.chrXR_group6 7336275 89 - 13314419 ------AUGGGUGGCCACGG---AGAACACGGAGACCCCGGAGACACGUUACCGUAGCGUAG-AACCAAGAUAAAUGGGGACGAUAGAUGGGA----AGAUGU---- ------..((((..((....---.......))..)))).(....)(((((.((((..(((..-..(((.......)))..)))....))))..----.)))))---- ( -20.80, z-score = -0.29, R) >droAna3.scaffold_13337 14632545 84 + 23293914 ----------GCA----GAGAU-AAGCGGUUUAAGAGACAG-CAGAAAGCACUGUG--GCAG-GGCGGAGAUAAA--CAGUUGAAAGAUGUCGGCCCAGAAAUCU-- ----------...----.((((-..((.(((.....))).(-(((......)))).--)).(-(((.((.((...--(....)....)).)).))))....))))-- ( -18.00, z-score = -0.51, R) >droEre2.scaffold_4784 20715119 100 - 25762168 UUUAAGAUAAGUGAGUCAAGUC-AAAGCACUAAAACCAGAG-CACAGACAAGUGCGGAGUGG-AGUGCAGAUAAG--CAGAUGAAAGAUGUCGCCCUAGACAUUU-- .....(((......))).....-...(((((...(((...(-(((......)))).).))..-))))).......--........(((((((......)))))))-- ( -22.30, z-score = -1.87, R) >droYak2.chr3L 4702673 95 + 24197627 UUUAAGAUAAGUG-----AGUC-AAAGCACUAAAACCAGAG-CACAGAUAAGUGUGGAGUGG-AGUGCAGAUAAG--CAGAUGAAAGAUGUCGCCCUAGACGUUU-- ..........((.-----.(((-...(((((...(((...(-(((......)))).).))..-))))).)))..)--).......(((((((......)))))))-- ( -21.40, z-score = -2.24, R) >droSec1.super_11 921997 95 - 2888827 UUUAAGAUAAGUG-----AGUC-AAAGCACUAAAACCAUCG-CACAGAUAAGUGUGGAGUGG-AGUGCAGAUAGC--CAGAUGAAAGAUGUCGCCCUAGACAUUU-- .....(((.....-----.)))-...(((((....((((((-(((......)))))..))))-))))).......--........(((((((......)))))))-- ( -22.50, z-score = -2.27, R) >droSim1.chr3L 20380252 96 - 22553184 UUUAAGAUAAGUG-----AGUC-AAAGCACUAAAACCAUUG-CACAGAUAAGUGUGGAGUGG-AGUGCAGAUAGU-GCAGAUGAAAGAUGUCGCCCUAGACAUCU-- .....(((.....-----.)))-...(((((....(((((.-((((......)))).)))))-))))).......-.........(((((((......)))))))-- ( -26.90, z-score = -3.09, R) >droMoj3.scaffold_6680 21554120 93 - 24764193 ---------AUUG--CAAAAGCAACAGGAACAGCAACAGAG-CGGAAGUGCCCGUCACUUGGCAGCCACGAUCUC--CAGCCAGAAGAUCUCCAGCAAUUACCAUAC ---------.(((--(....))))..((....((......)-)(((.(((.(.(((....))).).)))(((((.--(.....).))))))))........)).... ( -19.60, z-score = -0.48, R) >consensus UUUAAGAUAAGUG_____AGUC_AAAGCACUAAAACCAGAG_CACAGAUAAGUGUGGAGUGG_AGUGCAGAUAAC__CAGAUGAAAGAUGUCGCCCUAGACAUUU__ ..........................(((((...((......(((......)))....))...))))).................(((((((......))))))).. ( -5.79 = -7.03 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:18 2011