| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,998,443 – 20,998,536 |
| Length | 93 |
| Max. P | 0.587634 |
| Location | 20,998,443 – 20,998,536 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 92.15 |
| Shannon entropy | 0.14032 |
| G+C content | 0.59451 |
| Mean single sequence MFE | -32.40 |
| Consensus MFE | -27.82 |
| Energy contribution | -28.30 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587634 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20998443 93 - 24543557 CCUCAAUGCGCCAGCUUUAGCAGGAGCAGGUGUCGGAGCCACCGCAUCUUCCGCCGCCAAAGAGAUAUCCCGCAAGGCAGCUCCACAAGCGGU ........(((..((....)).(((((.((((.((((((....))....)))).))))...........((....))..)))))....))).. ( -30.50, z-score = -0.98, R) >droSim1.chr3L 20353186 93 - 22553184 CCUCAAUGCUCCAGCUUUAGCAGGAGCAGGUGUCGGAGCCACCGCAUCUUCCGCCGCCAAAGAGAUAUCCCGCAAGGCAGCUCCACAAGCGGU ......((((((.((....)).))))))((((.(((.....)))))))....(((((....(((.....((....))...))).....))))) ( -33.20, z-score = -2.20, R) >droSec1.super_11 894911 93 - 2888827 CCUCAAUGCUCCAGCUUUAGCAGGAGCAGGUGUCGGAGCCACCGCAUCUUCCGCCGCCAAAGAGAUAUCCCGCAAGGCAGCUCCACAAGCGGU ......((((((.((....)).))))))((((.(((.....)))))))....(((((....(((.....((....))...))).....))))) ( -33.20, z-score = -2.20, R) >droYak2.chr3L 4664818 87 + 24197627 CCUCAAUGCUCC------AGCAGGAGCAGGAGUUGGAGCUACUGCAUCUUCUGCCGCCAAAGAGAUAUCCCGCAAGGCAGCUCCACAAGCGGU ((.(..((((((------....))))))(((((((..((....))((((.((........))))))...((....)))))))))....).)). ( -30.30, z-score = -0.98, R) >droEre2.scaffold_4784 20687628 93 - 25762168 CCUCAAUGCUCCAGUUGGAGCAGGAGCAGGAGUUGGAGCUUCCGCAUCUUCUGCCGCCAAAGAGAUAUCCCGCAAGGCAGCUCCUCAAGCGGU .(((..((((((....))))))((.(((((((.(((.....)))...)))))))..))...))).....((((.(((.....)))...)))). ( -34.80, z-score = -1.18, R) >consensus CCUCAAUGCUCCAGCUUUAGCAGGAGCAGGUGUCGGAGCCACCGCAUCUUCCGCCGCCAAAGAGAUAUCCCGCAAGGCAGCUCCACAAGCGGU ......((((((.((....)).))))))((((.(((.....)))))))....(((((....(((.....((....))...))).....))))) (-27.82 = -28.30 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:13 2011