| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,978,498 – 20,978,559 |
| Length | 61 |
| Max. P | 0.800901 |
| Location | 20,978,498 – 20,978,559 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 67.46 |
| Shannon entropy | 0.57284 |
| G+C content | 0.39213 |
| Mean single sequence MFE | -13.65 |
| Consensus MFE | -7.10 |
| Energy contribution | -6.05 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.800901 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20978498 61 - 24543557 UUUUUUUUUUUUUACCAAAUUGGGGCAACCGCUGGGAUACAACUUGGCUUUUUUGGGAGAU ..............(((((...((....))((..((......))..))...)))))..... ( -15.20, z-score = -2.56, R) >droSim1.chr3L 20333136 58 - 22553184 --UUUUUUUUUCUACCAAAUUGGGGCAACCGCUGGGUUACAACUUGG-UUUUUUGGGAGAU --........(((.(((((...((....))((..(((....)))..)-)..))))).))). ( -15.80, z-score = -2.18, R) >droSec1.super_11 874906 57 - 2888827 ---UUUUUUUUUUACCAAAUUGGGGCAACCGCUGGGUUACAACUUGG-UUUUUUGGGAGAU ---...........(((((...((....))((..(((....)))..)-)..)))))..... ( -13.90, z-score = -1.67, R) >droYak2.chr3L 4641284 57 + 24197627 --UUUUUUUUUUAAUCAAAUUGGGACAACCGCUGGGAUAAAGUUUGG-GUUUUGGGAAAA- --.(((((((..((((.....((.....))(((.......)))...)-)))..)))))))- ( -6.30, z-score = 1.17, R) >dp4.chrXR_group6 12152633 54 + 13314419 -------UUUUUAACCAAAUUGGGCCAAGCAGGGGACCCAGCUCCCUUUUUUUUGGUUUUU -------.....(((((((..(((...(((.((....)).)))))).....)))))))... ( -15.00, z-score = -0.75, R) >droPer1.super_12 563660 53 + 2414086 -------AUUUUAACCAAAUUGGGCCAAGCAGGGGACCCAGCUCCC-UUUUUUUGGUUUUU -------.....(((((((..(((...(((.((....)).))))))-....)))))))... ( -15.70, z-score = -1.04, R) >consensus ___UUUUUUUUUAACCAAAUUGGGGCAACCGCUGGGAUAAAACUUGG_UUUUUUGGGAGAU ..............(((((...((....)).(((((......)))))....)))))..... ( -7.10 = -6.05 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:12 2011