| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,973,483 – 20,973,585 |
| Length | 102 |
| Max. P | 0.842342 |
| Location | 20,973,483 – 20,973,585 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 77.15 |
| Shannon entropy | 0.40494 |
| G+C content | 0.46088 |
| Mean single sequence MFE | -28.85 |
| Consensus MFE | -13.26 |
| Energy contribution | -14.22 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20973483 102 + 24543557 -AGUCGUCGCCCCCAUUUGGACUGCAUUU-GCAGGCUGUUCGUUUUAAUCAAAUUCACAUUAACAACAGCAAAGCCUGCAACUGCAACAGC-AAGACUGCAACAC--- -((((...((..((....))..((((.((-((((((((((.((((((((.........))))).))))))..))))))))).))))...))-..)))).......--- ( -28.30, z-score = -2.37, R) >droSim1.chr3L 20328121 102 + 22553184 -AGUCGUCGCCCCCAUUUGGGCUGCAUUU-GCAGGCUGUUCGUUUUAAUCAAAUUCACAUUAACAACAGCACAGCCUGCAACUGCAACAGC-GAGACUGCAACAC--- -((((.((((.(((....))).((((.((-(((((((((.(((((((((.........))))).))).).))))))))))).))))...))-)))))).......--- ( -38.90, z-score = -4.99, R) >droSec1.super_11 869808 102 + 2888827 -AGUCGUCGCCCCCAUUUGGGCUGCAUUU-GCAGGCUGUUCGUUUUAAUCAAAUUCACAUUAACAACAGCAAAGCCUGCAACUGCAACAGC-AAGACUGCAACAC--- -.((.(((((((......))))((((.((-((((((((((.((((((((.........))))).))))))..))))))))).)))).....-..))).)).....--- ( -34.00, z-score = -3.64, R) >droYak2.chr3L 4636294 106 - 24197627 -AGUCGUCGCCCC-AUUUGGGCUGCAUUUUGCGGGCUGUUCGUUUUAAUCAAAUUCACAUUAACAAUAGCAAAGGCUGCAGCCUGAACAACUGCAACACCAACUGCAG -............-.((..(((((((.(((....((((((.(((.................)))))))))..))).)))))))..))...(((((........))))) ( -28.03, z-score = -0.75, R) >droWil1.scaffold_180949 937302 90 - 6375548 UAUGUGCUGCUCU-AUUAGGUUUCAUUUUUACAGCCCGUUCGUUUUAAUCAAAUUCACAUUAACAACAGCAGCAGCAGCCGCAGCAAAAGC----------------- ..(((((((((((-....((((..........)))).(((.((((((((.........))))).)))))))).))))).))))........----------------- ( -15.00, z-score = -0.03, R) >consensus _AGUCGUCGCCCCCAUUUGGGCUGCAUUU_GCAGGCUGUUCGUUUUAAUCAAAUUCACAUUAACAACAGCAAAGCCUGCAACUGCAACAGC_AAGACUGCAACAC___ .....((.((((......)))).)).....((((((((((.((((((((.........))))).))))))..)))))))............................. (-13.26 = -14.22 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:11 2011