| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,940,760 – 5,940,850 |
| Length | 90 |
| Max. P | 0.998133 |
| Location | 5,940,760 – 5,940,850 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 98.44 |
| Shannon entropy | 0.02683 |
| G+C content | 0.31111 |
| Mean single sequence MFE | -18.76 |
| Consensus MFE | -18.44 |
| Energy contribution | -18.44 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.990491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5940760 90 + 23011544 UUGGGCCACAAAACACAAAAUCGUCUUAAGUAUUUUGUGUGGUUUAAAUAAAGUAAAAAUAAUAAUGCAAAAGUAAAACCCAAUGCCCAG .(((((......((((((((((.......).)))))))))(((((.......(((..........))).......)))))....))))). ( -18.44, z-score = -2.56, R) >droSim1.chr2L 5728072 90 + 22036055 UUGGGCCACAAAACACAAAAUCGUCUUAAGUAUUUUGUGUGGUUUAAAUAAAGUAAAAAUAAUAAUGCACAAGUAAAACCCAAUGCCCAG .(((((......((((((((((.......).)))))))))(((((.......(((..........))).......)))))....))))). ( -18.44, z-score = -2.22, R) >droSec1.super_5 4011394 90 + 5866729 UUGGGCCACAAAACACAAAAUCGUCUUAAGUAUUUUGUGUGGUUUAAAUAAAGUAAAAAUAAUAAUGCAAAAGUAAAACCCAGUGCCCAG .(((((.((...((((((((((.......).)))))))))(((((.......(((..........))).......)))))..))))))). ( -20.04, z-score = -2.95, R) >droYak2.chr2L 9068611 90 - 22324452 UUGGGCCACAAAACACAAAAUCGUCUUAAGUAUUUUGUGUGGUUUAAAUAAAGUAAAAAUAAUAAUGCAAAAAUAAAACCCAAUGCCCAG .(((((......((((((((((.......).)))))))))(((((.......(((..........))).......)))))....))))). ( -18.44, z-score = -2.74, R) >droEre2.scaffold_4929 6026095 90 + 26641161 UUGGGCCACAAAACACAAAAUCGUCUUAAGUAUUUUGUGUGGUUUAAAUAAAGUAAAAAUAAUAAUGCAAAAAUAAAACCCAAUGCCCAG .(((((......((((((((((.......).)))))))))(((((.......(((..........))).......)))))....))))). ( -18.44, z-score = -2.74, R) >consensus UUGGGCCACAAAACACAAAAUCGUCUUAAGUAUUUUGUGUGGUUUAAAUAAAGUAAAAAUAAUAAUGCAAAAGUAAAACCCAAUGCCCAG .(((((......((((((((((.......).)))))))))(((((.......(((..........))).......)))))....))))). (-18.44 = -18.44 + -0.00)
| Location | 5,940,760 – 5,940,850 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 98.44 |
| Shannon entropy | 0.02683 |
| G+C content | 0.31111 |
| Mean single sequence MFE | -23.49 |
| Consensus MFE | -23.31 |
| Energy contribution | -23.31 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.67 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.27 |
| SVM RNA-class probability | 0.998133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5940760 90 - 23011544 CUGGGCAUUGGGUUUUACUUUUGCAUUAUUAUUUUUACUUUAUUUAAACCACACAAAAUACUUAAGACGAUUUUGUGUUUUGUGGCCCAA .(((((....(((((..............................))))).((((((((((..((.....))..))))))))))))))). ( -23.31, z-score = -3.74, R) >droSim1.chr2L 5728072 90 - 22036055 CUGGGCAUUGGGUUUUACUUGUGCAUUAUUAUUUUUACUUUAUUUAAACCACACAAAAUACUUAAGACGAUUUUGUGUUUUGUGGCCCAA .(((((....(((((.....(((.(........).))).......))))).((((((((((..((.....))..))))))))))))))). ( -24.20, z-score = -3.48, R) >droSec1.super_5 4011394 90 - 5866729 CUGGGCACUGGGUUUUACUUUUGCAUUAUUAUUUUUACUUUAUUUAAACCACACAAAAUACUUAAGACGAUUUUGUGUUUUGUGGCCCAA .(((((....(((((..............................))))).((((((((((..((.....))..))))))))))))))). ( -23.31, z-score = -3.74, R) >droYak2.chr2L 9068611 90 + 22324452 CUGGGCAUUGGGUUUUAUUUUUGCAUUAUUAUUUUUACUUUAUUUAAACCACACAAAAUACUUAAGACGAUUUUGUGUUUUGUGGCCCAA .(((((....(((((..............................))))).((((((((((..((.....))..))))))))))))))). ( -23.31, z-score = -3.69, R) >droEre2.scaffold_4929 6026095 90 - 26641161 CUGGGCAUUGGGUUUUAUUUUUGCAUUAUUAUUUUUACUUUAUUUAAACCACACAAAAUACUUAAGACGAUUUUGUGUUUUGUGGCCCAA .(((((....(((((..............................))))).((((((((((..((.....))..))))))))))))))). ( -23.31, z-score = -3.69, R) >consensus CUGGGCAUUGGGUUUUACUUUUGCAUUAUUAUUUUUACUUUAUUUAAACCACACAAAAUACUUAAGACGAUUUUGUGUUUUGUGGCCCAA .(((((....(((((..............................))))).((((((((((..((.....))..))))))))))))))). (-23.31 = -23.31 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:08 2011