| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,933,554 – 20,933,643 |
| Length | 89 |
| Max. P | 0.950132 |
| Location | 20,933,554 – 20,933,643 |
|---|---|
| Length | 89 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 63.26 |
| Shannon entropy | 0.71856 |
| G+C content | 0.38339 |
| Mean single sequence MFE | -19.18 |
| Consensus MFE | -6.47 |
| Energy contribution | -7.28 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950132 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20933554 89 - 24543557 UAAACGAAUGUU-UAUGCACCAGUUGUUCCACACAGUGGGACAUGACGCUCAAGAGCUUAUAAAAGUUAAUAAAGCCUUAAAAAGUAUGA ...........(-(((((......((((((((...))))))))(((.(((....(((((....))))).....))).)))....)))))) ( -18.30, z-score = -1.40, R) >droAna3.scaffold_13337 14543465 84 + 23293914 -CCACAGAUACUAUAGGAGACAGU-AUGGCACAAAACUGUAAGAGAGGUUGUACAAAUAAGGAACCACUUCUCAA----AGAAACUGUGA -.(((((............(((((-.(......).)))))..(((((((.((.(.......).)).)))))))..----.....))))). ( -19.60, z-score = -1.96, R) >droEre2.scaffold_4784 20621899 83 - 25762168 CACACGAAUGUU-UAUGGAGCAGU---UCCAUACAGUGGGACAUCAGGCUAAAGUGCUUUUAAAAA-UAAUAAAA--UAAGACAGCAUGG ..((....((((-(........((---(((((...)))))))...((((......)))).......-........--..)))))...)). ( -13.10, z-score = -0.15, R) >droYak2.chr3L 4594456 67 + 24197627 CAAACGAAUGUU-UAUGGAGCAGUUGUUCCACACAGUGGGACAUGACGCUAAAGAGCUU-UAAAACAGG--------------------- ........((((-(.((((((...((((((((...))))))))...(......).))))-)))))))..--------------------- ( -17.10, z-score = -2.20, R) >droSec1.super_11 830357 89 - 2888827 CAAGCAAAUGUU-UAUGGAGCAGUUGUUCCACACGGUGGGACAUAAAGCUCCAGAACUUAUAAAAGUUAAUAAAGCCCUAAAAAGCAUGA .......(((((-(.((((((...((((((((...))))))))....)))))).(((((....)))))..............)))))).. ( -25.40, z-score = -3.49, R) >droSim1.chr3L 20294104 89 - 22553184 CAAACGAAUGUU-UAUGGAGCAGUUGUUCUACACAGUGGGACAUGAUGCUCAAAAGCUUAUAAAAGUUAAUAAAGCCCUAAAAAGCAUGA .......(((((-(...(((((..((((((((...))))))))...)))))...(((((....)))))..............)))))).. ( -21.60, z-score = -2.26, R) >consensus CAAACGAAUGUU_UAUGGAGCAGUUGUUCCACACAGUGGGACAUGACGCUCAAGAGCUUAUAAAAGUUAAUAAAG___UAAAAAGCAUGA ..................(((...((((((((...))))))))....)))........................................ ( -6.47 = -7.28 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:08 2011