| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,923,936 – 20,924,052 |
| Length | 116 |
| Max. P | 0.500000 |
| Location | 20,923,936 – 20,924,052 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 85.87 |
| Shannon entropy | 0.24294 |
| G+C content | 0.47291 |
| Mean single sequence MFE | -36.70 |
| Consensus MFE | -26.46 |
| Energy contribution | -26.94 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 20923936 116 - 24543557 UGGGUCGGGCUGGGGGUUUUGAAAGAAAGAGCCCAGCUGGCGAACUGAUCGAAAUCUGCCCACAUCAGCAUCGGUUAAUCCUAUAGCUAUGUACAUACAUACA---UAUAUGCUAUAUG .(((((((.(((((..((((....))))...))))))))))....(((((((....(((........))))))))))..))((((((((((((......))))---))...)))))).. ( -33.30, z-score = -0.96, R) >droSim1.chr3L 20284459 115 - 22553184 UGGGCCGGGCUGGGGGCUUUG-AGGAAAGAGCCCAGCUGGCGAACUGAUCGAAAUCUGCCCACAUCAGCAUCGGUUAAUCCUAUAGCUAUGUACAUACAUAUA---CAUAUGCUAUAUG .(((((((.(((((..((((.-...))))..))))))))))....(((((((....(((........))))))))))..))((((((((((((........))---)))).)))))).. ( -39.70, z-score = -2.00, R) >droSec1.super_11 820750 115 - 2888827 UGGGCCGGGCUGGGGGCUUUG-AGGAAAGAGCCCAGCUGGCGAACUGAUCGAAAUCUGCCCACAUCAGCAUCGGUUAAUCCUAUAGCUAUGUACAUACAUAUA---CAUAUGCUAUAUG .(((((((.(((((..((((.-...))))..))))))))))....(((((((....(((........))))))))))..))((((((((((((........))---)))).)))))).. ( -39.70, z-score = -2.00, R) >droYak2.chr3L 4584856 110 + 24197627 UGGGUCGGGCUGGAUUUUUCA-ACGAAAGAGCCCAGCUGGCGAACUGAUCGAAAUCUGCCCACAUCAGCAUCGGUUAAACCCAUAGCUAUAUGC-UAUGUAUAUGCUAUAUG------- .(((((.((((((.((((((.-..))))))..)))))).).....(((((((....(((........)))))))))).))))(((((.((((((-...)))))))))))...------- ( -34.00, z-score = -1.94, R) >droEre2.scaffold_4784 20612692 117 - 25762168 UGGGUCGGGCUGGAUUUUUCA-A-GUAAGAGCCCAGCUGGCGAACUGAUCGAAAUCUGCCCACAUCAGCAUCGGUUAAACCUAUAGCCAUGUACACAUAUAUGUGCUAUGUGCUAUGUG ......((((.(((((((...-(-((....(((.....)))..)))....)))))))))))((((.(((((.((.....)).(((((((((((....)))))).)))))))))))))). ( -36.80, z-score = -1.48, R) >consensus UGGGUCGGGCUGGGGGUUUUG_AGGAAAGAGCCCAGCUGGCGAACUGAUCGAAAUCUGCCCACAUCAGCAUCGGUUAAUCCUAUAGCUAUGUACAUACAUAUA___UAUAUGCUAUAUG .(((((((.(((((..((((.....))))..))))))))))....(((((((....(((........))))))))))..))((((((((((...............)))).)))))).. (-26.46 = -26.94 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:07 2011