| Sequence ID | dm3.chr3L |
|---|---|
| Location | 20,909,782 – 20,909,873 |
| Length | 91 |
| Max. P | 0.773443 |
| Location | 20,909,782 – 20,909,873 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 82.67 |
| Shannon entropy | 0.31692 |
| G+C content | 0.56505 |
| Mean single sequence MFE | -29.35 |
| Consensus MFE | -21.30 |
| Energy contribution | -21.63 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 20909782 91 - 24543557 ------UCGACGAGGGGUUCGAUCAUGGGGAUGGGUAUCCGUGGAGGAUAGCAGUUAACUGGGUGCCCAAAGU--GGAGUCGGCGAACAAGAGCUGAUG ------((.((...((((....(((.(..(((.(.(((((.....))))).).)))..))))..))))...))--.))((((((........)))))). ( -30.50, z-score = -2.09, R) >droSim1.chr3L 20270220 91 - 22553184 ------UCGACGAGGGGUUCGAUCAUGGGGAUGGGUAUCCGUGGAGGAUAGCAGUUAACUGGGUGCCCAAAGU--GGAGUCGGCGAACAAGAGCUGAUG ------((.((...((((....(((.(..(((.(.(((((.....))))).).)))..))))..))))...))--.))((((((........)))))). ( -30.50, z-score = -2.09, R) >droYak2.chr3L 4568455 88 + 24197627 ---------UCGAGGGGCUCGAUCAUGGGGAUGGGUAUCCGUGGAGGAUAGCAGUUAACUGGGUGCCCAAAGU--GGAGUCGGCAAACAAGAGCUGAUG ---------(((((...)))))((((.....((((((((((.(...(((....)))..)))))))))))..))--)).((((((........)))))). ( -27.30, z-score = -1.16, R) >droEre2.scaffold_4784 20598883 88 - 25762168 ---------UCGAGGGGCUCGAUCACGGGGUUGGGCAUCCGUGGAGGAUAGCAGUCAACUGGGUGCCCAAAGU--GGAGUCGGCAAACAAGAGCUGAUG ---------(((((...)))))((((....(((((((((((.(...(((....)))..)))))))))))).))--)).((((((........)))))). ( -35.00, z-score = -2.81, R) >droAna3.scaffold_13337 14517905 98 + 23293914 UUUCUGGAUCAGGGGGAUAUAGUCGGGGGGACAUAUAGUAGGGGGGGG-AGCGGUCAACUGGCUGCCCAAAGUGGGGAAACGGCAAACAAGAGCUGAUG (..(((...)))..)......((((((....).....((.......((-.((((((....))))))))...((.(.....).))..)).....))))). ( -22.30, z-score = 0.42, R) >droSec1.super_11 806529 91 - 2888827 ------UCGACGAGGGGUUCGAUCAUGGGGAUGGGUAUCCGUGGAGGAUAGCAGUUAACUGGGUGCCCAAAGU--GGAGUCGGCGAACAAGAGCUGAUG ------((.((...((((....(((.(..(((.(.(((((.....))))).).)))..))))..))))...))--.))((((((........)))))). ( -30.50, z-score = -2.09, R) >consensus ______UCGACGAGGGGUUCGAUCAUGGGGAUGGGUAUCCGUGGAGGAUAGCAGUUAACUGGGUGCCCAAAGU__GGAGUCGGCAAACAAGAGCUGAUG ..............((((....(((.(..(((.(.(((((.....))))).).)))..))))..))))..........((((((........)))))). (-21.30 = -21.63 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:41:06 2011